Mtfr1 (mitochondrial fission regulator 1)

Gene: Mtfr1 (mitochondrial fission regulator 1) Chinchilla lanigera

Analyze

Symbol:

Mtfr1

Name:

mitochondrial fission regulator 1

RGD ID:

8713618

Description:

INVOLVED IN aerobic respiration (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN cytosol (ortholog); mitochondrion (ortholog); plasma membrane (ortholog)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955444	13,481,270 - 13,520,673 (-)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

aerobic respiration (ISO)

Cellular Component

cytosol (ISO)

mitochondrion (ISO)

plasma membrane (ISO)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Mtfr1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955444	13,481,270 - 13,520,673 (-)	NCBI	ChiLan1.0	ChiLan1.0

MTFR1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	8	65,643,889 - 65,778,598 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	8	65,644,734 - 65,771,261 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	8	66,556,969 - 66,622,798 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	8	66,719,528 - 66,785,340 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	8	62,548,374 - 62,614,202 (+)	NCBI		Celera
Cytogenetic Map	8	q13.1	NCBI
HuRef	8	62,046,952 - 62,112,914 (+)	NCBI		HuRef
CHM1_1	8	66,611,523 - 66,677,456 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	8	66,069,548 - 66,197,575 (+)	NCBI		T2T-CHM13v2.0

Mtfr1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	19,241,481 - 19,274,981 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	19,241,491 - 19,274,981 (+)	Ensembl		GRCm39 Ensembl
GRCm38	3	19,187,315 - 19,220,817 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	19,187,327 - 19,220,817 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	3	19,088,244 - 19,120,805 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	3	19,380,395 - 19,412,956 (+)	NCBI		MGSCv36	mm8
Celera	3	19,178,811 - 19,211,401 (+)	NCBI		Celera
Cytogenetic Map	3	A2	NCBI
cM Map	3	5.36	NCBI

Mtfr1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	103,594,458 - 103,629,697 (+)	NCBI		GRCr8
mRatBN7.2	2	101,678,331 - 101,713,547 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	101,679,265 - 101,713,544 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	108,196,295 - 108,230,638 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	106,317,417 - 106,351,754 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	101,292,516 - 101,326,813 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	104,005,696 - 104,040,914 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	104,020,955 - 104,039,198 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	123,727,716 - 123,762,927 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	104,315,054 - 104,333,297 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	104,245,758 - 104,278,219 (+)	NCBI
Celera	2	97,087,548 - 97,105,789 (+)	NCBI		Celera
Cytogenetic Map	2	q24	NCBI

MTFR1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	7	81,376,429 - 81,504,541 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	8	57,015,953 - 57,144,072 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	8	62,184,249 - 62,265,239 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	8	63,853,159 - 63,933,929 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	8	63,853,944 - 63,933,929 (+)	Ensembl	panpan1.1		panPan2

MTFR1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	29	15,314,955 - 15,390,776 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	29	15,315,069 - 15,389,458 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	29	15,636,884 - 15,712,602 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	29	15,400,018 - 15,476,023 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	29	15,399,872 - 15,476,025 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	29	15,417,446 - 15,493,336 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	29	15,532,588 - 15,608,322 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	29	15,793,667 - 15,869,490 (+)	NCBI		UU_Cfam_GSD_1.0

Mtfr1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	66,561,693 - 66,614,240 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936496	8,170,116 - 8,224,482 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936496	8,171,020 - 8,223,712 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MTFR1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	68,902,857 - 68,969,615 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	68,902,854 - 68,969,998 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	75,061,582 - 75,128,846 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

MTFR1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	8	61,507,898 - 61,594,433 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	8	61,507,971 - 61,594,221 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666039	79,923,061 - 80,013,576 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Mtfr1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624744	25,810,833 - 25,871,454 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_013518201	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01039101	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01039102	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01039103	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBCC01008320	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_013518201 ⟹ XP_013373655

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955444	13,481,270 - 13,520,673 (-)	NCBI

Sequence:

show sequence

CGGGGATTGGCTGATTGGCGGCAACGTCCCGGGACAGCCAATCTGGAAACCCGAGTCGCTGGAG
AAGCTGCTGGCTGCCGCGCGGCGGTGTTTGCTTTATGGACCATGTGCTGCTATGTATGCCTGAA
GTACTTGAAATGCAAATTTGGGAAAGCTTTGCCATCTAAATGCTTGGCTGGATTAAGCGCCTGA
TGAGGATGGTTTTTCAGCAGGTTGGAGTAAGCATGCAGTCGGTACTTTGGTCAGGAAAACCATA
TGGTTCATCGCGAAGTATCGTAAGGAAAATTGGCACTAACTTATCTCTGATCCAGTGTCCAAGA
GTTCAGTTCCAGCTTACTAGCCATGTGACAGAGTGGAATTCCAGTCCCCTGAGAGACGATGCGG
TGGCGTCTTTTGCTGATGTCACGTGGGTAGCCACAGAAGGAGGAGAGTACTCAACAAGACTCAG
GACAGAGGTCAGATCCAGTTTACCCCTTCAGGATGACCTTTTCTTCGAGAAGCCCCCAAGCAGG
CATGTTTCCTTACCAAACTTGTCCCAAGAAGAGCCTCCAGCGAAGACCACAACACTGGTGAACG
AGGAAGCACTGCAGAAGATCTGTGCGCTTGAAAATGAACTTGCTGCCCTCAGAGCTCAGATTGC
TAAAATTGTGACCCTGCAAGAGCAACAAAATCTCACTACAGGTGACTTAGATTCTACCACATCT
GCTACTGTTGCNNNNNNNNCGCCCCCGCCCCCGCCTCCGCCACCCCTTCCCGTGGGGCGCCACC
AGAGCGTATCTGCTATTGATCTGATTAAAGAGCGTAGAGAGCAAAAAGTCAGTTCTGGAAAGAC
TTTGGCTAAGAACACCCCGAAGAACCCTGACATGCCAAATATGCTAGAGATCCTTAAAGATATG
AACAGCGTAAAGCTTCGGTCCGTCAGGAGGTCAGAGCAAGATGTAAAGCCCAAGGCAGTGGATG
CTACCGACCCTGCTGCTCTCATAGCAGAGGCTCTGAAAAAGAAGTTTGCGTATCGGTATCAAAG
CAGTGGCCAAAGTGAAGCTGAAAAAGGAGTTCCAAAGTCTGAGTCGGAGACTACCTCAGAGACA
GCATTGTTTGGGCCACATATGTTGAAGTCTACAGGAAAAATGAAGGCTCTAATTGAAAATGTTT
CAAACTCTTGATGGACAGTGAGCTGAGAAAGACTCCTGGTTCAGCTGTTGTTTTGTGAGGGCTG
AGTTTGGCTAGTAGAAATCTGCACTATTTAGTAAATACCTGACTTTAGTATTCATTGGTTTCTT
TTTTAACCTGATTAGAGGATTAAGTAATAACGAAAGTCCTATAAGTTTGGTTCTGATGATGTTT
TTGATGTATAGCTAGGGTGTTCAGATTTCCAGTCTTGGAAACATTTGTAAGACTTGAGAACATA
GAAAAGACATTTGTGATGTTACACATTTTTAATTAACACTAATTTATCTTTATGTTTTATATTT
ATATATTGATATAAAACAATTCATATAAAATTAATGATGGCAATGAAGGTACTATTATCTTCAT
TCATTTAAAAAATTGTTTACTATTCAGTGATGGAAAAGTTGGTGTAACCTAAGTTGTTGAAATG
AATTTGAGATTGGAATCTTCTTGCCCCGAGTAGAATTTACACCTTAGATTTTTGCCCATGTTTT
GGAGGTGGGCTTTGCATAGGAACTGGACGATGTGCACCGCAGAGGTTCTGTAATGCTTTACATC
AGGGTGAAGCTGAGGACAAGAGAGGCTTGCTTGTGTCCCATTGCCATCCAGTGCTGAGGAGACG
TTTGTAGTTTCCAAGTAGTGACAAATTATTGAATTAAATTACTTTTTAGGTAAAAACCAGAATG
TACTATCTTGTTTTCAGTTTAATAAATGGCATCATAAAGATGG

hide sequence

Protein Sequences


Protein RefSeqs	XP_013373655	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000003133.1

RefSeq Acc Id:

XP_013373655 ⟸ XM_013518201

- Sequence:

show sequence

MLGWIKRLMRMVFQQVGVSMQSVLWSGKPYGSSRSIVRKIGTNLSLIQCPRVQFQLTSHVTEWN
SSPLRDDAVASFADVTWVATEGGEYSTRLRTEVRSSLPLQDDLFFEKPPSRHVSLPNLSQEEPP
AKTTTLVNEEALQKICALENELAALRAQIAKIVTLQEQQNLTTGDLDSTTSATVAXXXPPPPPP
PPLPVGRHQSVSAIDLIKERREQKVSSGKTLAKNTPKNPDMPNMLEILKDMNSVKLRSVRRSEQ
DVKPKAVDATDPAALIAEALKKKFAYRYQSSGQSEAEKGVPKSESETTSETALFGPHMLKSTGK
MKALIENVSNS

hide sequence

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000002242	UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000003197.1	UniProtKB/TrEMBL
InterPro	Mtfr1	UniProtKB/TrEMBL
NCBI Gene	Mtfr1	ENTREZGENE
PANTHER	MITOCHONDRIAL FISSION REGULATOR 1	UniProtKB/TrEMBL
	PTHR14215	UniProtKB/TrEMBL
Pfam	Mito_fiss_reg	UniProtKB/TrEMBL
UniProt	A0A8C2UU03_CHILA	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar