Cibar1 (CBY1 interacting BAR domain containing 1) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Cibar1 (CBY1 interacting BAR domain containing 1) Chinchilla lanigera
Analyze
Symbol: Cibar1
Name: CBY1 interacting BAR domain containing 1
RGD ID: 8712175
Description: ENCODES a protein that exhibits phospholipid binding (ortholog); INVOLVED IN cilium assembly (ortholog); inner mitochondrial membrane organization (ortholog); limb morphogenesis (ortholog); ASSOCIATED WITH ciliopathy (ortholog); Postaxial Polydactyly, Type A1 (ortholog); Postaxial Polydactyly, Type A9 (ortholog); FOUND IN centriole (ortholog); ciliary basal body (ortholog); ciliary base (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: Fam92a; Fam92a1; family with sequence similarity 92 member A; family with sequence similarity 92 member A1; family with sequence similarity 92, member A1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541710,059,844 - 10,079,192 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541710,060,500 - 10,080,119 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References


Genomics

Comparative Map Data
Cibar1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541710,059,844 - 10,079,192 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541710,060,500 - 10,080,119 (+)NCBIChiLan1.0ChiLan1.0
CIBAR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl893,698,561 - 93,731,527 (+)EnsemblGRCh38hg38GRCh38
GRCh38893,700,550 - 93,731,527 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37894,712,778 - 94,743,755 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36894,781,949 - 94,809,850 (+)NCBINCBI36hg18NCBI36
Celera890,898,882 - 90,926,735 (+)NCBI
Cytogenetic Map8q22.1NCBI
HuRef889,920,298 - 89,948,209 (+)NCBIHuRef
CHM1_1894,753,060 - 94,780,964 (+)NCBICHM1_1
Cibar1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39412,153,142 - 12,172,047 (-)NCBIGRCm39mm39
GRCm39 Ensembl412,153,409 - 12,172,015 (-)Ensembl
GRCm38412,153,142 - 12,172,023 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl412,153,409 - 12,172,015 (-)EnsemblGRCm38mm10GRCm38
MGSCv37412,080,869 - 12,099,162 (-)NCBIGRCm37mm9NCBIm37
MGSCv36412,080,871 - 12,099,144 (-)NCBImm8
Celera411,963,141 - 11,981,484 (-)NCBICelera
Cytogenetic Map4A1NCBI
Cibar1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2525,613,993 - 25,632,440 (-)NCBImRatBN7.2
Rnor_6.0 Ensembl525,732,644 - 25,750,826 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0525,732,457 - 25,750,953 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0530,436,344 - 30,454,797 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4526,402,199 - 26,420,568 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1526,402,385 - 26,420,568 (-)NCBI
Celera524,943,561 - 24,962,057 (-)NCBICelera
Cytogenetic Map5q13NCBI
CIBAR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1892,270,482 - 92,298,846 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl892,270,538 - 92,298,846 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0890,324,158 - 90,353,161 (+)NCBIMhudiblu_PPA_v0panPan3
CIBAR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12938,604,389 - 38,630,482 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2938,603,965 - 38,630,171 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2938,765,543 - 38,793,446 (+)NCBI
ROS_Cfam_1.02938,807,621 - 38,835,652 (+)NCBI
UMICH_Zoey_3.12938,821,457 - 38,849,431 (+)NCBI
UNSW_CanFamBas_1.02938,816,102 - 38,844,102 (+)NCBI
UU_Cfam_GSD_1.02939,257,385 - 39,285,597 (+)NCBI
Cibar1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530340,923,864 - 40,944,622 (-)NCBI
SpeTri2.0NW_0049365446,848,026 - 6,868,522 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CIBAR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl442,957,712 - 42,985,459 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1442,957,848 - 42,985,482 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2446,381,548 - 46,407,873 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CIBAR1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1888,670,290 - 88,700,834 (+)NCBI
ChlSab1.1 Ensembl888,670,298 - 88,699,883 (+)Ensembl
Vero_WHO_p1.0NW_02366603952,144,662 - 52,178,844 (-)NCBI
Cibar1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247631,180,699 - 1,201,766 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000007237   ⟹   ENSCLAP00000007125
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541710,059,844 - 10,079,192 (+)Ensembl
RefSeq Acc Id: XM_005381785   ⟹   XP_005381842
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541710,060,500 - 10,080,119 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005381842 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005381842   ⟸   XM_005381785
- Sequence:
RefSeq Acc Id: ENSCLAP00000007125   ⟸   ENSCLAT00000007237


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000005013 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000007125 ENTREZGENE
Ensembl Transcript ENSCLAT00000007237 ENTREZGENE
NCBI Gene Fam92a1 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-12-25 Cibar1  CBY1 interacting BAR domain containing 1  Fam92a  family with sequence similarity 92 member A  Symbol and/or name change 5135510 APPROVED
2016-10-04 Fam92a  family with sequence similarity 92 member A  Fam92a1  family with sequence similarity 92 member A1  Symbol and/or name change 5135510 APPROVED
2016-08-16 Fam92a1  family with sequence similarity 92 member A1    family with sequence similarity 92, member A1  Symbol and/or name change 5135510 APPROVED