Ccm2 (CCM2 scaffold protein) - Rat Genome Database

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Gene: Ccm2 (CCM2 scaffold protein) Chinchilla lanigera
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Symbol: Ccm2
Name: CCM2 scaffold protein
RGD ID: 8712078
Description: INVOLVED IN blood vessel development (ortholog); blood vessel endothelial cell differentiation (ortholog); cell-cell junction organization (ortholog); PARTICIPATES IN p38 MAPK signaling pathway; ASSOCIATED WITH cavernous hemangioma (ortholog); Central Nervous System Vascular Malformations (ortholog); cerebral cavernous malformation (ortholog); FOUND IN cytoplasm (ortholog); mitochondrion (ortholog); protein-containing complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: cerebral cavernous malformation 2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554567,227,667 - 7,256,206 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554567,232,224 - 7,251,012 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References


Genomics

Comparative Map Data
Ccm2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554567,227,667 - 7,256,206 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554567,232,224 - 7,251,012 (-)NCBIChiLan1.0ChiLan1.0
CCM2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl744,999,475 - 45,076,469 (+)EnsemblGRCh38hg38GRCh38
GRCh38744,999,746 - 45,076,470 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37745,039,345 - 45,116,069 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36745,006,312 - 45,082,594 (+)NCBINCBI36hg18NCBI36
Build 34744,813,091 - 44,889,290NCBI
Celera745,138,311 - 45,215,025 (+)NCBI
Cytogenetic Map7p13NCBI
HuRef744,925,168 - 45,000,206 (+)NCBIHuRef
CHM1_1745,071,187 - 45,120,010 (+)NCBICHM1_1
CRA_TCAGchr7v2745,078,823 - 45,155,546 (+)NCBI
Ccm2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39116,496,887 - 6,546,761 (+)NCBIGRCm39mm39
GRCm39 Ensembl116,496,887 - 6,546,744 (+)Ensembl
GRCm38116,546,887 - 6,596,761 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl116,546,887 - 6,596,744 (+)EnsemblGRCm38mm10GRCm38
MGSCv37116,446,890 - 6,496,764 (+)NCBIGRCm37mm9NCBIm37
MGSCv36116,446,959 - 6,496,747 (+)NCBImm8
Celera117,046,830 - 7,080,913 (+)NCBICelera
Cytogenetic Map11A1NCBI
Ccm2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21481,418,418 - 81,464,114 (+)NCBI
Rnor_6.0 Ensembl1486,813,082 - 86,859,406 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01486,812,728 - 86,859,408 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01480,446,382 - 80,492,853 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41487,307,223 - 87,353,553 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11487,348,279 - 87,372,312 (+)NCBI
Celera1480,300,228 - 80,345,851 (+)NCBICelera
Cytogenetic Map14q21NCBI
CCM2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1745,808,339 - 45,856,966 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl745,808,145 - 45,858,828 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0745,714,413 - 45,791,016 (+)NCBIMhudiblu_PPA_v0panPan3
CCM2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11610,347,801 - 10,392,560 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1610,347,145 - 10,394,594 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha162,564,197 - 2,608,955 (+)NCBI
ROS_Cfam_1.01614,251,951 - 14,296,712 (-)NCBI
UNSW_CanFamBas_1.01613,885,048 - 13,930,006 (-)NCBI
UU_Cfam_GSD_1.01613,864,560 - 13,909,317 (-)NCBI
Ccm2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118100,596,897 - 100,670,627 (+)NCBI
SpeTri2.0NW_00493647819,820,092 - 19,882,358 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCM2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1850,396,423 - 50,450,132 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11850,396,423 - 50,450,442 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21855,227,250 - 55,260,933 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CCM2
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12113,606,716 - 13,687,656 (-)NCBI
ChlSab1.1 Ensembl2113,606,472 - 13,656,275 (-)Ensembl
Vero_WHO_p1.0NW_0236660628,848,862 - 8,922,452 (+)NCBI
Ccm2
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247407,308,178 - 7,348,681 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000008726   ⟹   ENSCLAP00000008599
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554567,227,667 - 7,251,045 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000008727   ⟹   ENSCLAP00000008600
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554567,232,581 - 7,256,206 (-)Ensembl
RefSeq Acc Id: XM_013520603   ⟹   XP_013376057
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554567,232,224 - 7,251,012 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013376057 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_013376057   ⟸   XM_013520603
- Sequence:
RefSeq Acc Id: ENSCLAP00000008599   ⟸   ENSCLAT00000008726
RefSeq Acc Id: ENSCLAP00000008600   ⟸   ENSCLAT00000008727


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000006017 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000008599 ENTREZGENE
Ensembl Transcript ENSCLAT00000008726 ENTREZGENE
NCBI Gene Ccm2 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-03-06 Ccm2  CCM2 scaffold protein    CCM2 scaffolding protein  Symbol and/or name change 5135510 APPROVED
2016-08-03 Ccm2  CCM2 scaffolding protein    cerebral cavernous malformation 2  Symbol and/or name change 5135510 APPROVED