Cul5 (cullin 5) - Rat Genome Database

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Gene: Cul5 (cullin 5) Chinchilla lanigera
Analyze
Symbol: Cul5
Name: cullin 5
RGD ID: 8712034
Description: ENCODES a protein that exhibits ubiquitin protein ligase binding (ortholog); INVOLVED IN cerebral cortex radially oriented cell migration (ortholog); protein ubiquitination (ortholog); radial glia guided migration of Purkinje cell (ortholog); PARTICIPATES IN neddylation pathway; proteasome degradation pathway involving cullin-dependent ubiquitin ligases; ASSOCIATED WITH ataxia telangiectasia (ortholog); Brain Injuries (ortholog); Breast Neoplasms (ortholog); FOUND IN Cul5-RING ubiquitin ligase complex (ortholog); cytoplasm (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cullin-5
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541210,256,381 - 10,336,156 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541210,266,072 - 10,336,156 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISS annotations to Chinchilla, Squirrel, Bonobo and/or Dog genes from Human gene annotations

Genomics

Comparative Map Data
Cul5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541210,256,381 - 10,336,156 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541210,266,072 - 10,336,156 (+)NCBIChiLan1.0ChiLan1.0
CUL5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811108,008,898 - 108,107,761 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl11108,008,898 - 108,107,761 (+)EnsemblGRCh38hg38GRCh38
GRCh3711107,879,624 - 107,978,488 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3611107,384,618 - 107,483,698 (+)NCBINCBI36hg18NCBI36
Build 3411107,384,854 - 107,482,773NCBI
Celera11105,033,798 - 105,132,859 (+)NCBI
Cytogenetic Map11q22.3NCBI
HuRef11103,804,481 - 103,903,597 (+)NCBIHuRef
CHM1_111107,762,661 - 107,861,678 (+)NCBICHM1_1
T2T-CHM13v2.011108,015,935 - 108,114,778 (+)NCBI
Cul5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39953,525,881 - 53,578,807 (-)NCBIGRCm39mm39
GRCm39 Ensembl953,525,882 - 53,581,314 (-)Ensembl
GRCm38953,614,581 - 53,667,507 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl953,614,582 - 53,670,014 (-)EnsemblGRCm38mm10GRCm38
MGSCv37953,422,687 - 53,475,612 (-)NCBIGRCm37mm9NCBIm37
MGSCv36953,379,265 - 53,429,872 (-)NCBImm8
Celera950,874,391 - 50,927,173 (-)NCBICelera
Cytogenetic Map9A5.3NCBI
Cul5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2854,012,963 - 54,066,751 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl854,016,006 - 54,066,666 (-)Ensembl
Rnor_6.0858,199,992 - 58,255,149 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl858,202,821 - 58,253,688 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0856,782,444 - 56,837,338 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4857,080,787 - 57,132,486 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1857,099,840 - 57,151,540 (-)NCBI
Celera853,506,656 - 53,557,091 (-)NCBICelera
Cytogenetic Map8q24NCBI
CUL5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.111106,371,759 - 106,469,989 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11106,371,759 - 106,469,989 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v011102,895,611 - 102,994,447 (+)NCBIMhudiblu_PPA_v0panPan3
CUL5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1524,393,692 - 24,477,595 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl524,396,823 - 24,488,043 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha524,319,399 - 24,414,613 (-)NCBI
ROS_Cfam_1.0524,422,828 - 24,518,010 (-)NCBI
ROS_Cfam_1.0 Ensembl524,422,832 - 24,518,012 (-)Ensembl
UMICH_Zoey_3.1524,470,110 - 24,565,387 (-)NCBI
UNSW_CanFamBas_1.0524,371,684 - 24,467,023 (-)NCBI
UU_Cfam_GSD_1.0524,429,854 - 24,525,492 (-)NCBI
Cul5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494790,811,798 - 90,894,693 (+)NCBI
SpeTri2.0NW_004936551641,469 - 724,706 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CUL5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl936,419,881 - 36,507,667 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1936,419,806 - 36,507,681 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2940,496,564 - 40,584,016 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CUL5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1199,432,034 - 99,538,296 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl199,432,706 - 99,534,888 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604326,419,221 - 26,524,597 (-)NCBIVero_WHO_p1.0
Cul5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247842,736,490 - 2,820,564 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046247842,736,462 - 2,822,854 (+)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000018693   ⟹   ENSCLAP00000018512
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541210,256,381 - 10,336,156 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000018694   ⟹   ENSCLAP00000018513
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541210,280,520 - 10,336,143 (+)Ensembl
RefSeq Acc Id: XM_013510972   ⟹   XP_013366426
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541210,266,072 - 10,336,156 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013366426 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_013366426   ⟸   XM_013510972
- Sequence:
RefSeq Acc Id: ENSCLAP00000018513   ⟸   ENSCLAT00000018694
RefSeq Acc Id: ENSCLAP00000018512   ⟸   ENSCLAT00000018693
Protein Domains
CULLIN_2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000012699 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCLAP00000018512.1 UniProtKB/TrEMBL
  ENSCLAP00000018513 ENTREZGENE
  ENSCLAP00000018513.1 UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000018693.1 UniProtKB/TrEMBL
  ENSCLAT00000018694 ENTREZGENE
  ENSCLAT00000018694.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.10 UniProtKB/TrEMBL
InterPro Cullin UniProtKB/TrEMBL
  Cullin_CS UniProtKB/TrEMBL
  Cullin_homology UniProtKB/TrEMBL
  Cullin_homology_sf UniProtKB/TrEMBL
  Cullin_N UniProtKB/TrEMBL
  Cullin_neddylation_domain UniProtKB/TrEMBL
  Cullin_repeat-like_dom_sf UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/TrEMBL
  WH_DNA-bd_sf UniProtKB/TrEMBL
NCBI Gene Cul5 ENTREZGENE
PANTHER PTHR11932 UniProtKB/TrEMBL
Pfam Cullin UniProtKB/TrEMBL
  Cullin_Nedd8 UniProtKB/TrEMBL
PROSITE CULLIN_1 UniProtKB/TrEMBL
  CULLIN_2 UniProtKB/TrEMBL
SMART CULLIN UniProtKB/TrEMBL
  Cullin_Nedd8 UniProtKB/TrEMBL
Superfamily-SCOP SSF46785 UniProtKB/TrEMBL
  SSF74788 UniProtKB/TrEMBL
  SSF75632 UniProtKB/TrEMBL
UniProt A0A8C2VRB6_CHILA UniProtKB/TrEMBL
  A0A8C2VWF8_CHILA UniProtKB/TrEMBL