Ubl4b (ubiquitin like 4B) - Rat Genome Database

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Gene: Ubl4b (ubiquitin like 4B) Chinchilla lanigera
Analyze
Symbol: Ubl4b
Name: ubiquitin like 4B
RGD ID: 8711299
Description: INVOLVED IN positive regulation of protein targeting to mitochondrion (ortholog); ASSOCIATED WITH autistic disorder (ortholog); developmental and epileptic encephalopathy 32 (ortholog); genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ubiquitin-like 4B; ubiquitin-like protein 4B
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495543513,637,910 - 13,638,635 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Ubl4b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495543513,637,910 - 13,638,635 (+)NCBIChiLan1.0ChiLan1.0
UBL4B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381110,112,443 - 110,113,947 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1110,112,443 - 110,113,947 (+)EnsemblGRCh38hg38GRCh38
GRCh371110,655,065 - 110,656,569 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361110,456,585 - 110,458,092 (+)NCBINCBI36Build 36hg18NCBI36
Celera1108,902,036 - 108,903,543 (+)NCBICelera
Cytogenetic Map1p13.3NCBI
HuRef1108,524,556 - 108,526,063 (+)NCBIHuRef
CHM1_11110,769,937 - 110,771,444 (+)NCBICHM1_1
T2T-CHM13v2.01110,122,566 - 110,124,070 (+)NCBIT2T-CHM13v2.0
Ubl4b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393107,461,014 - 107,462,389 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3107,461,003 - 107,462,389 (-)EnsemblGRCm39 Ensembl
GRCm383107,553,698 - 107,555,073 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3107,553,687 - 107,555,073 (-)EnsemblGRCm38mm10GRCm38
MGSCv373107,356,616 - 107,357,991 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363107,681,754 - 107,683,129 (-)NCBIMGSCv36mm8
Celera3109,886,020 - 109,887,395 (-)NCBICelera
Cytogenetic Map3F2.3NCBI
cM Map346.83NCBI
Ubl4b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82197,880,669 - 197,883,167 (-)NCBIGRCr8
mRatBN7.22195,192,490 - 195,193,820 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2195,191,720 - 195,193,875 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2202,833,582 - 202,834,912 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02200,715,785 - 200,717,115 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02195,532,726 - 195,534,056 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02210,337,303 - 210,370,534 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
RGSC_v3.42203,107,245 - 203,110,347 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2187,841,702 - 187,843,052 (-)NCBICelera
Cytogenetic Map2q34NCBI
UBL4B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21116,924,448 - 116,971,643 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11116,072,564 - 116,109,602 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01112,728,737 - 112,760,988 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11127,584,679 - 127,611,893 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1127,581,341 - 127,581,865 (-)Ensemblpanpan1.1panPan2
PanPan1.1 Ensembl1127,581,341 - 127,581,865 (-)NCBIpanpan1.1panPan2
UBL4B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1641,859,051 - 41,859,770 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl641,858,083 - 41,860,425 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha644,635,549 - 44,636,267 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0642,190,495 - 42,191,213 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1641,923,481 - 41,924,199 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0641,881,636 - 41,882,354 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0642,316,709 - 42,317,427 (-)NCBIUU_Cfam_GSD_1.0
Ubl4b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505818,543,683 - 18,545,104 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049367041,569,302 - 1,570,452 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UBL4B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.14110,003,817 - 110,007,435 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
UBL4B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12023,429,119 - 23,429,776 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2023,429,147 - 23,429,671 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603835,029,746 - 35,031,229 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ubl4b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247725,877,524 - 5,880,003 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005388912   ⟹   XP_005388969
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543513,637,910 - 13,638,635 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005388969 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000013593.1
Reference Protein Sequences
RefSeq Acc Id: XP_005388969   ⟸   XM_005388912
- UniProtKB: A0A8C2VI01 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
Ubiquitin-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000009392 UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000013748.1 UniProtKB/TrEMBL
InterPro Ubiquitin-like_dom UniProtKB/TrEMBL
  Ubiquitin-like_domsf UniProtKB/TrEMBL
  Ubiquitin_CS UniProtKB/TrEMBL
  Ubiquitin_dom UniProtKB/TrEMBL
  Ubl4_C_TUGS UniProtKB/TrEMBL
  UBL4B UniProtKB/TrEMBL
NCBI Gene Ubl4b ENTREZGENE
PANTHER UBIQUITIN-LIKE PROTEIN 4B UniProtKB/TrEMBL
  UBIQUITIN-LIKE PROTEIN 4B UniProtKB/TrEMBL
Pfam Tugs UniProtKB/TrEMBL
  ubiquitin UniProtKB/TrEMBL
PRINTS UBIQUITIN UniProtKB/TrEMBL
PROSITE UBIQUITIN_1 UniProtKB/TrEMBL
  UBIQUITIN_2 UniProtKB/TrEMBL
SMART UBQ UniProtKB/TrEMBL
Superfamily-SCOP Ubiquitin-like UniProtKB/TrEMBL
UniProt A0A8C2VI01 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Ubl4b  ubiquitin like 4B    ubiquitin-like 4B  Symbol and/or name change 5135510 APPROVED