Itm2a (integral membrane protein 2A)

Gene: Itm2a (integral membrane protein 2A) Chinchilla lanigera

Analyze

Symbol:

Itm2a

Name:

integral membrane protein 2A

RGD ID:

8710784

Description:

INVOLVED IN plasma cell differentiation (ortholog); ASSOCIATED WITH autistic disorder (ortholog); COVID-19 (ortholog); genetic disease (ortholog)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955557	2,235,223 - 2,243,927 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955557	2,235,223 - 2,243,911 (-)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

COVID-19 (ISO)

genetic disease (ISO)

syndromic X-linked intellectual disability Lubs type (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

plasma cell differentiation (ISO)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Itm2a
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955557	2,235,223 - 2,243,927 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955557	2,235,223 - 2,243,911 (-)	NCBI	ChiLan1.0	ChiLan1.0

ITM2A
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	79,360,384 - 79,367,334 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	79,360,384 - 79,367,667 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	X	78,615,881 - 78,622,831 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	78,502,537 - 78,509,703 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	X	78,422,027 - 78,428,949	NCBI
Celera	X	78,856,181 - 78,863,347 (-)	NCBI		Celera
Cytogenetic Map	X	q21.1	NCBI
HuRef	X	72,195,097 - 72,202,264 (-)	NCBI		HuRef
CHM1_1	X	78,509,045 - 78,516,210 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	X	77,797,066 - 77,804,015 (-)	NCBI		T2T-CHM13v2.0

Itm2a
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	106,440,801 - 106,446,966 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	106,440,705 - 106,446,982 (-)	Ensembl		GRCm39 Ensembl
GRCm38	X	107,397,195 - 107,403,360 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	107,397,099 - 107,403,376 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	X	104,592,534 - 104,598,699 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	X	103,599,914 - 103,606,079 (-)	NCBI		MGSCv36	mm8
Celera	X	94,234,855 - 94,241,346 (-)	NCBI		Celera
Cytogenetic Map	X	D	NCBI
cM Map	X	47.52	NCBI

Itm2a
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	76,559,183 - 76,565,144 (-)	NCBI		GRCr8
mRatBN7.2	X	72,486,383 - 72,492,344 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	72,486,381 - 72,492,363 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	X	73,982,580 - 73,988,542 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	77,502,307 - 77,508,257 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	75,062,872 - 75,068,833 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	78,490,872 - 78,496,814 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	78,490,866 - 78,496,847 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	X	78,689,825 - 78,695,767 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	X	95,637,901 - 95,643,845 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	X	73,777,451 - 73,783,344 (-)	NCBI		Celera
Cytogenetic Map	X	q22	NCBI

ITM2A
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	78,874,710 - 78,881,798 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	78,878,321 - 78,885,409 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	68,475,114 - 68,482,274 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	78,585,836 - 78,593,037 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	X	78,585,836 - 78,593,037 (-)	Ensembl	panpan1.1		panPan2

Itm2a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	54,940,289 - 54,947,031 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936547	1,260,696 - 1,267,618 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936547	1,260,705 - 1,267,443 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ITM2A
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	X	63,430,021 - 63,437,032 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	X	63,430,020 - 63,437,027 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	X	72,699,051 - 72,706,070 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ITM2A
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	X	68,339,399 - 68,346,572 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	X	68,339,357 - 68,346,415 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666067	13,006,174 - 13,013,388 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Itm2a
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624836	1,657,568 - 1,664,297 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624836	1,657,678 - 1,663,905 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005412649	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013508828	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013508829	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013508830	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013508831	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01073326	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01073327	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBCQ01150407	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCLAT00000000756 ⟹ ENSCLAP00000000721

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955557	2,235,223 - 2,243,927 (-)	Ensembl

RefSeq Acc Id:

ENSCLAT00000000757 ⟹ ENSCLAP00000000722

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955557	2,235,852 - 2,243,588 (-)	Ensembl

RefSeq Acc Id:

XM_005412649 ⟹ XP_005412706

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955557	2,235,223 - 2,243,898 (-)	NCBI

Sequence:

show sequence

GCTTGTTCTTATCTGACAGTGCAGAGGGTGGAAGCATGCCCGGGGTGCAGGTGAGGAACATTTA
GCCCTAGCAGGCCAAGGACTCCACATCCCCTCCTCTTCTTCACTACCAGTTTACCACCCCACAG
CCCCTCCACTGGGGCACTCAATCCCCCCTCCCCCGCCAGGACCTCCCTGGGCCCTCCCACAGTC
TCCCACCAAGCTTGGGAGTTCTTCATAAGTATCACCAGACCTGAGTTTGCAGTCTCATTAGGCA
GACTGTGAGAAAGTAGGTGGTGTTTGGGCAAGTGTGATCTCCTTCAACCTGCAGCCTGGGAAAC
TGTATCCAGCCACGCCGTACTGGGTAGCCAGAAGATACACCATGGTGAAAATCGCTTTCAACAT
ACTCGCAGGGGTGCAAAAGGAGGAGGCGCAGCAAGACGTGGAGGCCCTCGTGAGCCGCACGCTC
AGAGCACAGATCCTGACGGGCAAGAACACCATTTACCGTGGAGAAATGTGTTTCTTTGTTGCTG
TGGACCCTGTAAATTCCTTTCGTGGAGGAGAGCCTTACTTCCTATCTGTGACTGAGGAGGCTGA
CATTCGGGAGGATGACAACATTGCAATCATTGATGTGACTGTTCCCAGTTTCTCTGATAGTGAC
CCTGCAGCTATCATTCATGACTTCGAAAAGGGAATGACTGCTTACCTAGACATGCTCCTGGGGA
ACTGCTTTCTGATGCCTCTGAATACCTCCATTGTTATGCCTCCAAAGAATCTGGTGGAACTCTT
TAGCAAACTTGCAAGCAGAAAACACTTGCCTCATACTTATGTGGTTCATGAAGACCTTGTTGCT
GTTGAACAAATTCGTGATGTTAGTAATCTAGGCATCTTTATTTATCAACTTTGCAACAAAAGAA
AATCCTTCCGCCTTCGTCGCAGAGACCTCTTGCTAGGTTTCAACAAGCGTGCCATTGATAAGTG
CTGGAAGATTAGACACTTCCCCAATGAATTTATTGTTGAGACCAAGATCTGTCAAGAGTGAGAG
ACAACAAATAAAGAGTATCCTTGGTTATAAGAAGTCAGAGATTTACAATATAACTTCAGCTATG
GAAAATGCAAAAATTTACTAATGCATTTACTCTATTGTTTATAGTAGAAAAGAAAATTACAAAA
ATATTAACCACTTCAAGCAATTGCCAAATTTTAGATTAGCTGACATTGCTTGTTATTTGAAATT
AAATACTCATTATCTTTTTTAACTTTATAAAGTTTAGAGCTGTGAAAGCACAATGAATACATCA
GCTAACATCCGGACAATTCAGTCAACTATACTTATATAAAACAAGCTCTTCATGAAATCCTAAG
TCAAAGCATGTTGAAAATTTTAAATATTTAAATTTATTTTGATATTTTTATGGAAAACATGTAA
AATCTTTTAACATTGTTGTTTTTCATTTTGTATGCCTTTCCTGAACTCAGAAATTTCATCTTTG
CATTTCTGTTAGGTGCTCTATAATGAATTTGACTTATATGTGATGAATTTTCAGGAGGAAGTTA
TTACTTATGCAGTTACTCTTTCTCATTGATACCTGTAATGTGAAATACATAAAGCTGTATAGGT
GGTGAGTGCTACAAGGATTAAGGTTCCATGAATTCTAAAATTCTATATTAAATTTTAATATGTT
CAA

hide sequence

RefSeq Acc Id:

XM_013508828 ⟹ XP_013364282

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955557	2,235,223 - 2,243,910 (-)	NCBI

Sequence:

show sequence

GCTTCCTTTCTGGCTTGTTCTTATCTGACAGTGCAGAGGGTGGAAGCATGCCCGGGGTGCAGGT
GAGGAACATTTAGCCCTAGCAGGCCAAGGACTCCACATCCCCTCCTCTTCTTCACTACCAGTTT
ACCACCCCACAGCCCCTCCACTGGGGCACTCAATCCCCCCTCCCCCGCCAGGACCTCCCTGGGC
CCTCCCACAGTCTCCCACCAAGCTTGGGAGTTCTTCATAAGTATCACCAGACCTGAGTTTGCAG
TCTCATTAGGCAGACTGTGAGAAAGTAGGTGGTGTTTGGGCAAGTGTGATCTCCTTCAACCTGC
AGCCTGGGAAACTGTATCCAGCCACGCCGTACTGGGTAGCCAGAAGATACACCATGGTGAAAAT
CGCTTTCAACATACTCGCAGGGGTGCAAAAGGAGGAGGCGCAGCAAGACGTGGAGGCCCTCGTG
AGCCGCACGCTCAGAGCACAGATCCTGACGGGCAAGGGTCCACATTTGCTGACTCCGTTTACTC
TATCATTGAGTATTAATGCTGGTGAGGAATATATTGACAAATATAACAGAGAGACTAGCAAGCC
CTCCAGTTCTCACTGCCGGAGGAGAGGTACAGAGCTCCAAGTTGCCACCCAAGCAAATGAGGGC
ACCTCTGGGAGATGTATGCTTACTCTCCTAGGCCTTTCATTCATCTTGGCAGGACTTACTGTTG
GTGGAGCCTGCATTTACAAATACTTCATGCCCAAGAACACCATTTACCGTGGAGAAATGTGTTT
CTTTGTTGCTGTGGACCCTGTAAATTCCTTTCGTGGAGGAGAGCCTTACTTCCTATCTGTGACT
GAGGAGGCTGACATTCGGGAGGATGACAACATTGCAATCATTGATGTGACTGTTCCCAGTTTCT
CTGATAGTGACCCTGCAGCTATCATTCATGACTTCGAAAAGGGAATGACTGCTTACCTAGACAT
GCTCCTGGGGAACTGCTTTCTGATGCCTCTGAATACCTCCATTGTTATGCCTCCAAAGAATCTG
GTGGAACTCTTTAGCAAACTTGCAAGCAGAAAACACTTGCCTCATACTTATGTGGTTCATGAAG
ACCTTGTTGCTGTTGAACAAATTCGTGATGTTAGTAATCTAGGCATCTTTATTTATCAACTTTG
CAACAAAAGAAAATCCTTCCGCCTTCGTCGCAGAGACCTCTTGCTAGGTTTCAACAAGCGTGCC
ATTGATAAGTGCTGGAAGATTAGACACTTCCCCAATGAATTTATTGTTGAGACCAAGATCTGTC
AAGAGTGAGAGACAACAAATAAAGAGTATCCTTGGTTATAAGAAGTCAGAGATTTACAATATAA
CTTCAGCTATGGAAAATGCAAAAATTTACTAATGCATTTACTCTATTGTTTATAGTAGAAAAGA
AAATTACAAAAATATTAACCACTTCAAGCAATTGCCAAATTTTAGATTAGCTGACATTGCTTGT
TATTTGAAATTAAATACTCATTATCTTTTTTAACTTTATAAAGTTTAGAGCTGTGAAAGCACAA
TGAATACATCAGCTAACATCCGGACAATTCAGTCAACTATACTTATATAAAACAAGCTCTTCAT
GAAATCCTAAGTCAAAGCATGTTGAAAATTTTAAATATTTAAATTTATTTTGATATTTTTATGG
AAAACATGTAAAATCTTTTAACATTGTTGTTTTTCATTTTGTATGCCTTTCCTGAACTCAGAAA
TTTCATCTTTGCATTTCTGTTAGGTGCTCTATAATGAATTTGACTTATATGTGATGAATTTTCA
GGAGGAAGTTATTACTTATGCAGTTACTCTTTCTCATTGATACCTGTAATGTGAAATACATAAA
GCTGTATAGGTGGTGAGTGCTACAAGGATTAAGGTTCCATGAATTCTAAAATTCTATATTAAAT
TTTAATATGTTCAA

hide sequence

RefSeq Acc Id:

XM_013508829 ⟹ XP_013364283

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955557	2,235,223 - 2,243,911 (-)	NCBI

Sequence:

show sequence

GGCTTCCTTTCTGGCTTGTTCTTATCTGACAGTGCAGAGGGTGGAAGCATGCCCGGGGTGCAGG
TGAGGAACATTTAGCCCTAGCAGGCCAAGGACTCCACATCCCCTCCTCTTCTTCACTACCAGTT
TACCACCCCACAGCCCCTCCACTGGGGCACTCAATCCCCCCTCCCCCGCCAGGACCTCCCTGGG
CCCTCCCACAGTCTCCCACCAAGCTTGGGAGTTCTTCATAAGTATCACCAGACCTGAGTTTGCA
GTCTCATTAGGCAGACTGTGAGAAAGTAGGTGGTGTTTGGGCAAGTGTGATCTCCTTCAACCTG
CAGCCTGGGAAACTGTATCCAGCCACGCCGTACTGGGTAGCCAGAAGATACACCATGGTGAAAA
TCGCTTTCAACATACTCGCAGGGGTGCAAAAGGAGGAGGCGCAGCAAGACGTGGAGGCCCTCGT
GAGCCGCACGCTCAGAGCACAGATCCTGACGGGCAAGGGTCCACATTTGCTGACTCCGTTTACT
CTATCATTGAGTATTAATGCTGGTGAGGAATATATTGACAAATATAACAGAGAGACTAGCAAGC
CCTCCAGTTCTCACTGCCGGAGGAGAGGTACAGAGCTCCAAGTTGCCACCCAAGCAAATGAGGG
CACCTCTGGGAGATGTATGCTTACTCTCCTAGGCCTTTCATTCATCTTGGCAGGACTTACTGTT
GGTGGAGCCTGCATTTACAAATACTTCATGCCCAAGAACACCATTTACCGTGGAGAAATGTGTT
TCTTTGTTGCTGTGGACCCTGTAAATTCCTTTCGTGGAGGAGAGCCTTACTTCCTATCTGTGAC
TGAGGAGGCTGACATTCGGGAGGATGACAACATTGCAATCATTGATGTGACTGTTCCCAGTTTC
TCTGATAGTGACCCTGCAGCTATCATTCATGACTTCGAAAAGGGAATGACTGCTTACCTAGACA
TGCTCCTGGGGAACTGCTTTCTGATGCCTCTGAATACCTCCATTGTTATGCCTCCAAAGAATCT
GGTGGAACTCTTTAGCAAACTTGCAAGCAGAAAACACTTGCCTCATACTTATGTGGTTCATGAA
GACCTTGTTGCTGTTGAACAAATTCGTGATGTTAGTAATCTAGGCATCTTTATTTATCAACTTT
GCAACAAAAGAAAATCCTTCCGCCTTCGTCGCAGAGACCTCTTGCTAGGTTTCAACAAGCGTGC
CATTGATAAGTGCTGGAAGATTAGACACTTCCCCAATGAATTTATTGTTGAGACCAAGATCTGT
CAAGAGTGAGAGACAACAAATAAAGATTTAGAGCTGTGAAAGCACAATGAATACATCAGCTAAC
ATCCGGACAATTCAGTCAACTATACTTATATAAAACAAGCTCTTCATGAAATCCTAAGTCAAAG
CATGTTGAAAATTTTAAATATTTAAATTTATTTTGATATTTTTATGGAAAACATGTAAAATCTT
TTAACATTGTTGTTTTTCATTTTGTATGCCTTTCCTGAACTCAGAAATTTCATCTTTGCATTTC
TGTTAGGTGCTCTATAATGAATTTGACTTATATGTGATGAATTTTCAGGAGGAAGTTATTACTT
ATGCAGTTACTCTTTCTCATTGATACCTGTAATGTGAAATACATAAAGCTGTATAGGTGGTGAG
TGCTACAAGGATTAAGGTTCCATGAATTCTAAAATTCTATATTAAATTTTAATATGTTCAA

hide sequence

RefSeq Acc Id:

XM_013508830 ⟹ XP_013364284

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955557	2,235,223 - 2,243,911 (-)	NCBI

Sequence:

show sequence

GGCTTCCTTTCTGGCTTGTTCTTATCTGACAGTGCAGAGGGTGGAAGCATGCCCGGGGTGCAGG
TGAGGAACATTTAGCCCTAGCAGGCCAAGGACTCCACATCCCCTCCTCTTCTTCACTACCAGTT
TACCACCCCACAGCCCCTCCACTGGGGCACTCAATCCCCCCTCCCCCGCCAGGACCTCCCTGGG
CCCTCCCACAGTCTCCCACCAAGCTTGGGAGTTCTTCATAAGTATCACCAGACCTGAGTTTGCA
GTCTCATTAGGCAGACTGTGAGAAAGTAGGTGGTGTTTGGGCAAGTGTGATCTCCTTCAACCTG
CAGCCTGGGAAACTGTATCCAGCCACGCCGTACTGGGTAGCCAGAAGATACACCATGGTGAAAA
TCGCTTTCAACATACTCGCAGGGGTGCAAAAGGAGGAGGCGCAGCAAGACGTGGAGGCCCTCGT
GAGCCGCACGCTCAGAGCACAGATCCTGACGGGCAAGGGTCCACATTTGCTGACTCCGTTTACT
CTATCATTGAGTATTAATGCTGGTGAGGAATATATTGACAAATATAACAGAGAGACTAGCAAGC
CCTCCAGTTCTCACTGCCGGAGGAGAGGTACAGAGCTCCAAGTTGCCACCCAAGCAAATGAGGG
CACCTCTGGGAGATGTATGCTTACTCTCCTAGGCCTTTCATTCATCTTGGCAGGACTTACTGTT
GGTGGAGCCTGCATTTACAAATACTTCATGCCCAAGAACACCATTTACCGTGGAGAAATGTGTT
TCTTTGTTGCTGTGGACCCTGTAAATTCCTTTCGTGGAGGAGAGCCTTACTTCCTATCTGTGAC
TGAGGAGGCTGACATTCGGGAGGATGACAACATTGCAATCATTGATGTGACTGTTCCCAGTTTC
TCTGATAGTGACCCTGCAGCTATCATTCATGACTTCGAAAAGGGAATGACTGCTTACCTAGACA
TGCTCCTGGGGAACTGCTTTCTGATGCCTCTGAATACCTCCATTGTTATGCCTCCAAAGAATCT
GGTGGAACTCTTTAGCAAACTTGCAAGCAGAAAACACTTGCCTCATACTTATGTGGTTCATGAA
GACCTTGTTGCTGTTGAACAAATTCGTGATGTTAGTAATCTAGGCATCTTTATTTATCAACTTT
GCAACAAAAGAAAATCCTTCCGCCTTCGTCGCAGAGACCTCTTGCTAGGTTTCAACAAGCGTGC
CATTGATAAGTGCTGGAAGATTAGACACTTCCCCAATGAATTTATTGTTGAGACCAAGATCTGT
CAAGAGTGAGAGACAACAAATAAAGAGTGCTCTATAATGAATTTGACTTATATGTGATGAATTT
TCAGGAGGAAGTTATTACTTATGCAGTTACTCTTTCTCATTGATACCTGTAATGTGAAATACAT
AAAGCTGTATAGGTGGTGAGTGCTACAAGGATTAAGGTTCCATGAATTCTAAAATTCTATATTA
AATTTTAATATGTTCAA

hide sequence

RefSeq Acc Id:

XM_013508831 ⟹ XP_013364285

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955557	2,235,223 - 2,243,892 (-)	NCBI

Sequence:

show sequence

TCTTATCTGACAGTGCAGAGGGTGGAAGCATGCCCGGGGTGCAGGTGAGGAACATTTAGCCCTA
GCAGGCCAAGGACTCCACATCCCCTCCTCTTCTTCACTACCAGTTTACCACCCCACAGCCCCTC
CACTGGGGCACTCAATCCCCCCTCCCCCGCCAGGACCTCCCTGGGCCCTCCCACAGTCTCCCAC
CAAGCTTGGGAGTTCTTCATAAGTATCACCAGACCTGAGTTTGCAGTCTCATTAGGCAGACTGT
GAGAAAGTAGGTGGTGTTTGGGCAAGTGTGATCTCCTTCAACCTGCAGCCTGGGAAACTGTATC
CAGCCACGCCGTACTGGGTAGCCAGAAGATACACCATGGTGAAAATCGCTTTCAACATACTCGC
AGGGGTGCAAAAGGAGGAGGCGCAGCAAGACGTGGAGGCCCTCGTGAGCCGCACGCTCAGAGCA
CAGATCCTGACGGGCAAGGAGCTCCAAGTTGCCACCCAAGCAAATGAGGGCACCTCTGGGAGAT
GTATGCTTACTCTCCTAGGCCTTTCATTCATCTTGGCAGGACTTACTGTTGGTGGAGCCTGCAT
TTACAAATACTTCATGCCCAAGAACACCATTTACCGTGGAGAAATGTGTTTCTTTGTTGCTGTG
GACCCTGTAAATTCCTTTCGTGGAGGAGAGCCTTACTTCCTATCTGTGACTGAGGAGGCTGACA
TTCGGGAGGATGACAACATTGCAATCATTGATGTGACTGTTCCCAGTTTCTCTGATAGTGACCC
TGCAGCTATCATTCATGACTTCGAAAAGGGAATGACTGCTTACCTAGACATGCTCCTGGGGAAC
TGCTTTCTGATGCCTCTGAATACCTCCATTGTTATGCCTCCAAAGAATCTGGTGGAACTCTTTA
GCAAACTTGCAAGCAGAAAACACTTGCCTCATACTTATGTGGTTCATGAAGACCTTGTTGCTGT
TGAACAAATTCGTGATGTTAGTAATCTAGGCATCTTTATTTATCAACTTTGCAACAAAAGAAAA
TCCTTCCGCCTTCGTCGCAGAGACCTCTTGCTAGGTTTCAACAAGCGTGCCATTGATAAGTGCT
GGAAGATTAGACACTTCCCCAATGAATTTATTGTTGAGACCAAGATCTGTCAAGAGTGAGAGAC
AACAAATAAAGAGTATCCTTGGTTATAAGAAGTCAGAGATTTACAATATAACTTCAGCTATGGA
AAATGCAAAAATTTACTAATGCATTTACTCTATTGTTTATAGTAGAAAAGAAAATTACAAAAAT
ATTAACCACTTCAAGCAATTGCCAAATTTTAGATTAGCTGACATTGCTTGTTATTTGAAATTAA
ATACTCATTATCTTTTTTAACTTTATAAAGTTTAGAGCTGTGAAAGCACAATGAATACATCAGC
TAACATCCGGACAATTCAGTCAACTATACTTATATAAAACAAGCTCTTCATGAAATCCTAAGTC
AAAGCATGTTGAAAATTTTAAATATTTAAATTTATTTTGATATTTTTATGGAAAACATGTAAAA
TCTTTTAACATTGTTGTTTTTCATTTTGTATGCCTTTCCTGAACTCAGAAATTTCATCTTTGCA
TTTCTGTTAGGTGCTCTATAATGAATTTGACTTATATGTGATGAATTTTCAGGAGGAAGTTATT
ACTTATGCAGTTACTCTTTCTCATTGATACCTGTAATGTGAAATACATAAAGCTGTATAGGTGG
TGAGTGCTACAAGGATTAAGGTTCCATGAATTCTAAAATTCTATATTAAATTTTAATATGTTCA
A

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Protein Sequences


Protein RefSeqs	XP_005412706	(Get FASTA)	NCBI Sequence Viewer
	XP_013364282	(Get FASTA)	NCBI Sequence Viewer
	XP_013364283	(Get FASTA)	NCBI Sequence Viewer
	XP_013364284	(Get FASTA)	NCBI Sequence Viewer
	XP_013364285	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000000721
	ENSCLAP00000000721.1
	ENSCLAP00000000722
	ENSCLAP00000000722.1

RefSeq Acc Id:	XP_005412706 ⟸ XM_005412649
- Peptide Label:	isoform X3
- UniProtKB:	A0A8C2UKF9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVKIAFNILAGVQKEEAQQDVEALVSRTLRAQILTGKNTIYRGEMCFFVAVDPVNSFRGGEPYF LSVTEEADIREDDNIAIIDVTVPSFSDSDPAAIIHDFEKGMTAYLDMLLGNCFLMPLNTSIVMP PKNLVELFSKLASRKHLPHTYVVHEDLVAVEQIRDVSNLGIFIYQLCNKRKSFRLRRRDLLLGF NKRAIDKCWKIRHFPNEFIVETKICQE hide sequence

RefSeq Acc Id:

XP_013364284 ⟸ XM_013508830

- Peptide Label:

isoform X1

- Sequence:

show sequence

MVKIAFNILAGVQKEEAQQDVEALVSRTLRAQILTGKGPHLLTPFTLSLSINAGEEYIDKYNRE
TSKPSSSHCRRRGTELQVATQANEGTSGRCMLTLLGLSFILAGLTVGGACIYKYFMPKNTIYRG
EMCFFVAVDPVNSFRGGEPYFLSVTEEADIREDDNIAIIDVTVPSFSDSDPAAIIHDFEKGMTA
YLDMLLGNCFLMPLNTSIVMPPKNLVELFSKLASRKHLPHTYVVHEDLVAVEQIRDVSNLGIFI
YQLCNKRKSFRLRRRDLLLGFNKRAIDKCWKIRHFPNEFIVETKICQE

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RefSeq Acc Id:

XP_013364283 ⟸ XM_013508829

- Peptide Label:

isoform X1

- Sequence:

show sequence

MVKIAFNILAGVQKEEAQQDVEALVSRTLRAQILTGKGPHLLTPFTLSLSINAGEEYIDKYNRE
TSKPSSSHCRRRGTELQVATQANEGTSGRCMLTLLGLSFILAGLTVGGACIYKYFMPKNTIYRG
EMCFFVAVDPVNSFRGGEPYFLSVTEEADIREDDNIAIIDVTVPSFSDSDPAAIIHDFEKGMTA
YLDMLLGNCFLMPLNTSIVMPPKNLVELFSKLASRKHLPHTYVVHEDLVAVEQIRDVSNLGIFI
YQLCNKRKSFRLRRRDLLLGFNKRAIDKCWKIRHFPNEFIVETKICQE

hide sequence

RefSeq Acc Id:

XP_013364282 ⟸ XM_013508828

- Peptide Label:

isoform X1

- Sequence:

show sequence

MVKIAFNILAGVQKEEAQQDVEALVSRTLRAQILTGKGPHLLTPFTLSLSINAGEEYIDKYNRE
TSKPSSSHCRRRGTELQVATQANEGTSGRCMLTLLGLSFILAGLTVGGACIYKYFMPKNTIYRG
EMCFFVAVDPVNSFRGGEPYFLSVTEEADIREDDNIAIIDVTVPSFSDSDPAAIIHDFEKGMTA
YLDMLLGNCFLMPLNTSIVMPPKNLVELFSKLASRKHLPHTYVVHEDLVAVEQIRDVSNLGIFI
YQLCNKRKSFRLRRRDLLLGFNKRAIDKCWKIRHFPNEFIVETKICQE

hide sequence

RefSeq Acc Id:	XP_013364285 ⟸ XM_013508831
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C2UHR3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVKIAFNILAGVQKEEAQQDVEALVSRTLRAQILTGKELQVATQANEGTSGRCMLTLLGLSFIL AGLTVGGACIYKYFMPKNTIYRGEMCFFVAVDPVNSFRGGEPYFLSVTEEADIREDDNIAIIDV TVPSFSDSDPAAIIHDFEKGMTAYLDMLLGNCFLMPLNTSIVMPPKNLVELFSKLASRKHLPHT YVVHEDLVAVEQIRDVSNLGIFIYQLCNKRKSFRLRRRDLLLGFNKRAIDKCWKIRHFPNEFIV ETKICQE hide sequence

RefSeq Acc Id:

ENSCLAP00000000721 ⟸ ENSCLAT00000000756

RefSeq Acc Id:

ENSCLAP00000000722 ⟸ ENSCLAT00000000757

Protein Domains

BRICHOS

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000000574	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000000756	ENTREZGENE
	ENSCLAT00000000756.1	UniProtKB/TrEMBL
	ENSCLAT00000000757	ENTREZGENE
	ENSCLAT00000000757.1	UniProtKB/TrEMBL
InterPro	BRICHOS_dom	UniProtKB/TrEMBL
	ITM2	UniProtKB/TrEMBL
NCBI Gene	Itm2a	ENTREZGENE
PANTHER	INTEGRAL MEMBRANE PROTEIN 2A	UniProtKB/TrEMBL
	PTHR10962	UniProtKB/TrEMBL
Pfam	BRICHOS	UniProtKB/TrEMBL
PROSITE	BRICHOS	UniProtKB/TrEMBL
SMART	BRICHOS	UniProtKB/TrEMBL
UniProt	A0A8C2UHR3	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C2UKF9	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar