| Gene: Fndc7 (fibronectin type III domain containing 7) Chinchilla lanigera |
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Analyze |
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| Symbol: |
Fndc7 |
| Name: |
fibronectin type III domain containing 7 |
| RGD ID: |
8710719 |
| Description: |
ASSOCIATED WITH autistic disorder (ortholog); genetic disease (ortholog); hereditary spastic paraplegia 63 (ortholog) |
| Type: |
protein-coding
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| RefSeq Status: |
MODEL |
| Previously known as: |
fibronectin type III domain-containing protein 7 |
| RGD Orthologs |
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| Alliance Genes |
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| More Info |
more info ...
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| More Info |
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| Latest Assembly: |
ChiLan1.0 - Chinchilla ChiLan1.0 Assembly |
| Position: |
| Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
ChiLan1.0 Ensembl | NW_004955435 | 12,185,187 - 12,208,334 (+) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955435 | 12,185,187 - 12,213,242 (+) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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| JBrowse: |
View Region in Genome Browser (JBrowse)
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| Model |
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Imported Disease Annotations - ClinVar
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References
Additional References at PubMed
Genomics
Comparative Map Data
Fndc7
(Chinchilla lanigera - long-tailed chinchilla) |
| Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
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ChiLan1.0 Ensembl | NW_004955435 | 12,185,187 - 12,208,334 (+) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955435 | 12,185,187 - 12,213,242 (+) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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FNDC7
(Homo sapiens - human) |
| Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 1 | 108,712,908 - 108,742,749 (+) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 1 | 108,712,908 - 108,742,749 (+) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 1 | 109,255,530 - 109,285,371 (+) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 1 | 109,066,556 - 109,086,888 (+) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Celera | 1 | 107,525,376 - 107,555,183 (+) | NCBI | | Celera | | | Cytogenetic Map | 1 | p13.3 | NCBI | | | | | HuRef | 1 | 107,148,408 - 107,178,212 (+) | NCBI | | HuRef | | | CHM1_1 | 1 | 109,370,409 - 109,400,224 (+) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 1 | 108,746,166 - 108,775,994 (+) | NCBI | | T2T-CHM13v2.0 | | |
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Fndc7
(Mus musculus - house mouse) |
| Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 3 | 108,760,898 - 108,797,324 (-) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 3 | 108,760,994 - 108,797,324 (-) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 3 | 108,853,678 - 108,890,008 (-) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 3 | 108,853,678 - 108,890,008 (-) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 3 | 108,656,596 - 108,692,926 (-) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 3 | 108,983,377 - 109,017,926 (-) | NCBI | | MGSCv36 | mm8 | | Celera | 3 | 111,188,275 - 111,224,485 (-) | NCBI | | Celera | | | Cytogenetic Map | 3 | F3 | NCBI | | | | | cM Map | 3 | 47.84 | NCBI | | | | |
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Fndc7
(Rattus norvegicus - Norway rat) |
| Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 2 | 199,189,029 - 199,226,425 (-) | NCBI | | GRCr8 | | | mRatBN7.2 | 2 | 196,501,313 - 196,537,816 (-) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 2 | 196,502,460 - 196,537,694 (-) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 2 | 204,145,167 - 204,180,774 (-) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 2 | 202,026,964 - 202,062,237 (-) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 2 | 196,843,954 - 196,879,298 (-) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 2 | 211,655,482 - 211,690,802 (-) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 2 | 211,655,482 - 211,690,716 (-) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 2 | 231,129,567 - 231,164,934 (-) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 2 | 204,456,114 - 204,493,579 (-) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | RGSC_v3.1 | 2 | 204,419,090 - 204,456,331 (-) | NCBI | | | | | Celera | 2 | 189,149,953 - 189,186,014 (-) | NCBI | | Celera | | | Cytogenetic Map | 2 | q34 | NCBI | | | | |
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FNDC7
(Pan paniscus - bonobo/pygmy chimpanzee) |
| Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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NHGRI_mPanPan1-v2 | 1 | 118,561,765 - 118,594,305 (-) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 1 | 117,721,658 - 117,754,179 (-) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 1 | 111,085,903 - 111,107,599 (+) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 1 | 110,253,665 - 110,283,403 (+) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 1 | 110,253,665 - 110,278,221 (+) | Ensembl | panpan1.1 | | panPan2 | |
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FNDC7
(Canis lupus familiaris - dog) |
| Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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CanFam3.1 | 6 | 43,002,942 - 43,032,370 (-) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 6 | 43,003,190 - 43,032,321 (-) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 6 | 45,777,418 - 45,806,872 (-) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 6 | 43,334,732 - 43,364,414 (-) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 6 | 43,335,844 - 43,364,341 (-) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 6 | 43,065,094 - 43,094,553 (-) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 6 | 43,023,540 - 43,053,208 (-) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 6 | 43,465,280 - 43,495,944 (-) | NCBI | | UU_Cfam_GSD_1.0 | | |
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Fndc7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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FNDC7
(Sus scrofa - pig) |
| Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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Sscrofa11.1 Ensembl | 4 | 111,299,353 - 111,328,378 (-) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 4 | 111,299,357 - 111,328,550 (-) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 4 | 121,796,974 - 121,829,631 (-) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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FNDC7
(Chlorocebus sabaeus - green monkey) |
| Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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ChlSab1.1 | 20 | 24,843,700 - 24,873,784 (-) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 20 | 24,844,658 - 24,872,768 (-) | Ensembl | ChlSab1.1 | ChlSab1.1 Ensembl | chlSab2 | | Vero_WHO_p1.0 | NW_023666038 | 33,473,933 - 33,494,610 (+) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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Fndc7
(Heterocephalus glaber - naked mole-rat) |
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Expression
Sequence
| RefSeq Acc Id: |
ENSCLAT00000009217 ⟹ ENSCLAP00000009088 |
| Type: |
CODING |
| Position: |
| Chinchilla Assembly | Chr | Position (strand) | Source |
|---|
ChiLan1.0 Ensembl | NW_004955435 | 12,185,187 - 12,208,334 (+) | Ensembl |
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| RefSeq Acc Id: |
XM_005388833 ⟹ XP_005388890 |
| Type: |
CODING |
| Position: |
| Chinchilla Assembly | Chr | Position (strand) | Source |
|---|
ChiLan1.0 | NW_004955435 | 12,185,187 - 12,213,242 (+) | NCBI |
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| Sequence: |
ATGGCCAGAGAACCAGAGAAAGGTTTGTCTTTGATTGGATTCGTTCTCATCTGCCTTAAAATGA
TTGTTTCAGCCAAAACAGCTCCTGAAATACCTACTATTGATCAGGCATATTCAAAAATCAGCAA
CAGTATCACTGTAGAATGGGCTACAGTGCCGGGGGCCACCAGTTACCTGCTCACGGCTGCAGAC
GGAGACACCGTCATTGAAACCATGGTGGCCAATTCCCCGGGCACTGTGACGGGCCTGAAGGCTG
CAACCTTGTACCAAATCACCATCAGATCCATCAGTGCGGCCGGGAGAAGCCAGGCATCGCCTCC
AAAGCAGGCAAAGACAGTGTTGGCTGCACCAATTCTAGAAGTAAGCTCTCCAAGTCCAGAGTCA
ATCCTTGTGCAGTGGGAAGCTGTGTATATGGCAACTGGATTTTCCGTGTCCATTATGCAAGCCA
ATGGCTTGGGTAGAATTTGGAAAGAGAATACCACGAACACTTCCTTGACCTTCAGCAATTTAGA
CGCGGGGACTCTCTACACCGTGAAGGCGTATGCATGGAATGCAAATGGAATCCCAGGGGATGAC
TCCACCTGCAATCAGAGGACAAGTCCTCATGCCCCTGCCGACATCCAAGTCTCTTTTGACAGTG
GGGCTCTAAAGGCATCTGTTTCCTGGACACCGACAGAAGGAGCTTTCAACTATACCGTGATGGC
GCTGAGTGGCCCTTCCGAGCTTAGCTGTAGCACCAGTGTCAGCTCCTGCAGCGTCTCTTCCCTG
CAGTGTGGAACTGAGTACCTGATTTCCGTGTTAGCAAGTAATGACGCCGGGTTTAGCAAGTCCT
CCTCAGCAGTAAGGCTAAAGACGGTTGCTTGTGCACCTGCAAGAGTGACAGTCCAAGAAGATCC
CCCCGGCCATCTGTCTGTGGCTTGGTCCAGTGTTGATCTGGGTGATTACTATGTGGCTTTTGTA
AAGAGTGATGACGGCTTGGAAGTACACTGCAACACATCCCTCACCCTGTGCCACTTCCTGTCTG
AGTGTGGTTTCACCTATTTTATTAGTGTTTTTGCCTATAACAAGGCAGGACAAAGTCCTTTGGG
TGATGTATTCAATTATACCACAGCTCCCTGTTGTCCCAGCGACATTAACCCCGTGTTGGTGTCT
AGTGACAGAGTGGAGATCGTCTGGTCTCCTGTCCGCGGTGCCGAACTCTATGAAACCAAAGCTA
TAGCCGGGTACAGTGTGGTGGAGTGCAATGACACTGCTCCTGCTTGCACGCTCTCGGCTCTGGA
GTGTGACACCAAGTACAATGTCACGGTGTATTCATTCAGCGAAGTCCGCGGCAGCAATATGTCA
TGCACTTCCCGCCTTATCACTACAGCTCCTTGCAGCCCTGAGATAGAAAATATTTCAAAGGACG
CATTCTCCACAATTCACGTGCGCTGGCGAGCCGCTAATGATGATGCCGTTTACACGGTGACTGC
GCAGGGGGAGAAGGGGCTGTACCGCTGCAGCAGCAAGGGGGCGGCCTGCGCCATGGGGGGCCTG
CCCTGCGGCTCAGTGTTCTCCGTCACCGCGGTGGCTGAAACAGAGGTAGGACGGAGCCTGCCCA
GCTACAGTGTGCCCCTGGAAACAGTGCCATGCTGCCCAGCTGGTCTAACAATAACTCAGGTCAC
CCAGTCGGTAATCAACGTGAGCTGGACTTTTGAGACAGTGGCCCAAACCTATATGACAGTTCTG
GAGTCACACACGGGACAGTCTAAGTGTCACACCCATCAGAGTCACTGCCTCCTGGGATGTATCA
CGTGTGGGATCAACTACACAGTGGCATTAAAAGCAATTAGTGCCTCTGGGTTGACTTCAGACTG
CGCCTACCAAAGCTATTTCTCTAGTGCCTGCTGCCCTTTGGGGGTGAAATTATACAGGTTGGGC
CCTAATGGCATCCGGATCCACTGGCAAGTCTCCAGAGGCTCTGCCAATTACAGCACCGACCTCT
ATGGCTCCAAAGGCATCTTCACGTGTGCCCCAAGGGCTGGTCTCAGTTTCTGTGATGTCACCGA
GATACCTTGTGGGGACGTATATACAGTGATGGTTTCACCTGTTGCCGAAACAGGACTGAAGCTT
ACCTTCTGTCCAAAAAAAATATACTCAGTAACCTGCTCTGGCAGTACACTTGGAATGGTGATTT
ACAGAGGGAAGAGCAATGCAAAATGACACAGCAAGCCCTAAACTTATCTCAATTATTAGTGAGT
AGAGATGGAAAACATCCATTAGAATATAAAAATCTCTCTAAGATAGCAAAGATCCCTTTGTCCT
TGAGGAAAATAACTGACTCTCGCTTCGGAGTACAAGATCAGGTGTGTCATCAGCTGCCAAGGAG
TTCGACCTCAGCTGCAGAGAAGACTCTAGAGAAATGGACCCAGAGAGTCCTCTAGAAGAAAGCG
CACTGTCAGAGTTCTGGAAGCAGAAAAACTCTGTTTAGCAGAAATTCTGAGATTTCACATCCAG
AAACACTATAGACTTCAGCACATCCACACCGTGAGTGTTTAACACCAGCATTTACCGTGCTACC
CACTAGCCATTCAAGGCTGAAGAAGTCAAGCCAGCCACAGGAGGGCAGCGCTCAGCCTGAGACA
CACCTCTGCCAGGACTTCAGCTTAGGTCAGATAGCCGAGGCTATCAGAGCAACCTGTGGTAACA
AATACCCATTCATTGCAAGTTAAGGCCAAAGCTGAGCTGCCTGCAGGGTTCGTAGAGCCAAAGT
GTCACATGATCTGACATCTAAGGGAGTGTCTGGGAAAGCTTTGCTAGGATTGCAGTTGTGCTGA
GTGAGCAAAAATGTCAGATGGAGGAACAGCCAAAGGAGGCGCCTTGAGTTGTGACAGACTGACA
CAGACATATCTTTAGGCGGGGAGGGACATGAATCTTGTTGGCTGTATCCACACTTCCCCACTTC
CGTTTACTGCTTTTTTCATCT
hide sequence
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| RefSeq Acc Id: |
XP_005388890 ⟸ XM_005388833 |
| - UniProtKB: |
A0A8C2V314 (UniProtKB/TrEMBL) |
| - Sequence: |
MAREPEKGLSLIGFVLICLKMIVSAKTAPEIPTIDQAYSKISNSITVEWATVPGATSYLLTAAD
GDTVIETMVANSPGTVTGLKAATLYQITIRSISAAGRSQASPPKQAKTVLAAPILEVSSPSPES
ILVQWEAVYMATGFSVSIMQANGLGRIWKENTTNTSLTFSNLDAGTLYTVKAYAWNANGIPGDD
STCNQRTSPHAPADIQVSFDSGALKASVSWTPTEGAFNYTVMALSGPSELSCSTSVSSCSVSSL
QCGTEYLISVLASNDAGFSKSSSAVRLKTVACAPARVTVQEDPPGHLSVAWSSVDLGDYYVAFV
KSDDGLEVHCNTSLTLCHFLSECGFTYFISVFAYNKAGQSPLGDVFNYTTAPCCPSDINPVLVS
SDRVEIVWSPVRGAELYETKAIAGYSVVECNDTAPACTLSALECDTKYNVTVYSFSEVRGSNMS
CTSRLITTAPCSPEIENISKDAFSTIHVRWRAANDDAVYTVTAQGEKGLYRCSSKGAACAMGGL
PCGSVFSVTAVAETEVGRSLPSYSVPLETVPCCPAGLTITQVTQSVINVSWTFETVAQTYMTVL
ESHTGQSKCHTHQSHCLLGCITCGINYTVALKAISASGLTSDCAYQSYFSSACCPLGVKLYRLG
PNGIRIHWQVSRGSANYSTDLYGSKGIFTCAPRAGLSFCDVTEIPCGDVYTVMVSPVAETGLKL
TFCPKKIYSVTCSGSTLGMVIYRGKSNAK
hide sequence
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| RefSeq Acc Id: |
ENSCLAP00000009088 ⟸ ENSCLAT00000009217 |
Additional Information
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