Fermt1 (FERM domain containing kindlin 1) - Rat Genome Database

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Gene: Fermt1 (FERM domain containing kindlin 1) Chinchilla lanigera
Analyze
Symbol: Fermt1
Name: FERM domain containing kindlin 1
RGD ID: 8710684
Description: ENCODES a protein that exhibits actin filament binding (ortholog); INVOLVED IN basement membrane organization (ortholog); cell adhesion (ortholog); establishment of epithelial cell polarity (ortholog); PARTICIPATES IN integrin mediated signaling pathway; ASSOCIATED WITH Atrophy (ortholog); Erythema (ortholog); Kindler syndrome (ortholog); FOUND IN cell junction (ortholog); cell periphery (ortholog); cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: fermitin family homolog 1; fermitin family member 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541516,446,934 - 16,483,369 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541516,447,921 - 16,483,221 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References


Genomics

Comparative Map Data
Fermt1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541516,446,934 - 16,483,369 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541516,447,921 - 16,483,221 (-)NCBIChiLan1.0ChiLan1.0
FERMT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl206,074,845 - 6,123,030 (-)EnsemblGRCh38hg38GRCh38
GRCh38206,074,845 - 6,123,609 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37206,055,492 - 6,103,677 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36206,003,492 - 6,052,191 (-)NCBINCBI36hg18NCBI36
Build 34206,003,492 - 6,052,191NCBI
Celera206,126,766 - 6,175,354 (-)NCBI
Cytogenetic Map20p12.3NCBI
HuRef206,012,168 - 6,061,355 (-)NCBIHuRef
CHM1_1206,055,497 - 6,104,189 (-)NCBICHM1_1
Fermt1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392132,746,097 - 132,787,956 (-)NCBIGRCm39mm39
GRCm39 Ensembl2132,746,309 - 132,787,826 (-)Ensembl
GRCm382132,904,177 - 132,946,036 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2132,904,389 - 132,945,906 (-)EnsemblGRCm38mm10GRCm38
MGSCv372132,729,915 - 132,771,772 (-)NCBIGRCm37mm9NCBIm37
MGSCv362132,595,620 - 132,637,477 (-)NCBImm8
Celera2134,125,730 - 134,167,433 (-)NCBICelera
Cytogenetic Map2F2NCBI
Fermt1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.23120,171,301 - 120,213,555 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl3120,171,561 - 120,213,555 (-)Ensembl
Rnor_6.03125,566,744 - 125,607,864 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3125,566,643 - 125,607,735 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03132,049,511 - 132,090,550 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43120,699,769 - 120,744,016 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.13120,607,515 - 120,645,912 (-)NCBI
Celera3118,957,538 - 118,999,128 (-)NCBICelera
Cytogenetic Map3q36NCBI
FERMT1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1205,856,287 - 5,902,251 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl205,856,287 - 5,902,251 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0206,063,480 - 6,120,206 (-)NCBIMhudiblu_PPA_v0panPan3
FERMT1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12415,748,632 - 15,785,025 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2415,748,629 - 15,782,880 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2415,570,788 - 15,607,260 (+)NCBI
ROS_Cfam_1.02416,151,297 - 16,187,696 (+)NCBI
UMICH_Zoey_3.12415,757,632 - 15,794,124 (+)NCBI
UNSW_CanFamBas_1.02415,866,168 - 15,902,611 (+)NCBI
UU_Cfam_GSD_1.02416,197,744 - 16,234,285 (+)NCBI
Fermt1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640164,550,560 - 164,587,721 (+)NCBI
SpeTri2.0NW_00493648512,985,552 - 13,016,997 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FERMT1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1715,080,587 - 15,137,753 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11715,080,585 - 15,137,947 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21716,443,838 - 16,504,032 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FERMT1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1232,006,824 - 32,060,838 (+)NCBI
ChlSab1.1 Ensembl232,009,615 - 32,062,211 (+)Ensembl
Vero_WHO_p1.0NW_02366607112,480,750 - 12,534,757 (-)NCBI
Fermt1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247416,881,477 - 6,914,910 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000018659   ⟹   ENSCLAP00000018478
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495541516,446,934 - 16,483,369 (-)Ensembl
RefSeq Acc Id: XM_013512377   ⟹   XP_013367831
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495541516,447,921 - 16,483,221 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013367831 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_013367831   ⟸   XM_013512377
- Sequence:
RefSeq Acc Id: ENSCLAP00000018478   ⟸   ENSCLAT00000018659


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000012675 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000018478 ENTREZGENE
Ensembl Transcript ENSCLAT00000018659 ENTREZGENE
NCBI Gene Fermt1 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-02-16 Fermt1  FERM domain containing kindlin 1  Fermt1  fermitin family member 1  Symbol and/or name change 5135510 APPROVED