Smyd5 (SMYD family member 5) - Rat Genome Database

Name: Smyd5
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Smyd5 (SMYD family member 5) Chinchilla lanigera

Analyze

Symbol:

Smyd5

Name:

SMYD family member 5

RGD ID:

8710039

Description:

ENCODES a protein that exhibits histone H4K20 methyltransferase activity (ortholog); INVOLVED IN negative regulation of gene expression, epigenetic (ortholog); regulation of stem cell differentiation (ortholog); regulation of stem cell division (ortholog); ASSOCIATED WITH Alstrom syndrome (ortholog); congenital disorder of glycosylation type IIb (ortholog); dystonia (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

SET and MYND domain-containing protein 5

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SMYD5 (SMYD family member 5)	NCBI	Ortholog
Mus musculus (house mouse):	Smyd5 (SET and MYND domain containing 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Smyd5 (SMYD family member 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SMYD5 (SMYD family member 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SMYD5 (SMYD family member 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Smyd5 (SMYD family member 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SMYD5 (SMYD family member 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SMYD5 (SMYD family member 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Smyd5 (SMYD family member 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955424	12,408,059 - 12,423,164 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955424	12,408,059 - 12,422,424 (-)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Alstrom syndrome (ISO)

congenital disorder of glycosylation type IIb (ISO)

dystonia (ISO)

genetic disease (ISO)

Methylmalonyl-CoA Epimerase Deficiency (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

negative regulation of gene expression, epigenetic (ISO)

regulation of stem cell differentiation (ISO)

regulation of stem cell division (ISO)

retrotransposon silencing by heterochromatin formation (ISO)

Molecular Function

histone H4K20 methyltransferase activity (ISO)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

Smyd5
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955424	12,408,059 - 12,423,164 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955424	12,408,059 - 12,422,424 (-)	NCBI	ChiLan1.0	ChiLan1.0

SMYD5
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	73,214,245 - 73,227,221 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	73,214,222 - 73,227,221 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	73,441,373 - 73,454,349 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	73,294,874 - 73,307,863 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	2	73,353,044 - 73,366,010	NCBI
Celera	2	73,292,193 - 73,305,182 (+)	NCBI		Celera
Cytogenetic Map	2	p13.2	NCBI
HuRef	2	73,177,028 - 73,190,017 (+)	NCBI		HuRef
CHM1_1	2	73,372,172 - 73,385,162 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	73,227,234 - 73,240,210 (+)	NCBI		T2T-CHM13v2.0

Smyd5
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	85,408,958 - 85,423,411 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	85,408,971 - 85,423,417 (+)	Ensembl		GRCm39 Ensembl
GRCm38	6	85,431,976 - 85,446,429 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	85,431,989 - 85,446,435 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	85,381,970 - 85,396,423 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	6	85,397,647 - 85,411,441 (+)	NCBI		MGSCv36	mm8
Celera	6	87,403,922 - 87,418,368 (+)	NCBI		Celera
Cytogenetic Map	6	C3	NCBI
cM Map	6	37.44	NCBI

Smyd5
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	119,527,115 - 119,541,580 (+)	NCBI		GRCr8
mRatBN7.2	4	117,969,615 - 117,984,082 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	117,969,626 - 117,984,347 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	123,450,999 - 123,465,446 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	119,226,113 - 119,240,550 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	117,839,478 - 117,853,906 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	117,215,064 - 117,229,873 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	117,215,064 - 117,229,873 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	181,792,679 - 181,807,488 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	119,686,587 - 119,701,588 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	4	119,931,087 - 119,945,151 (+)	NCBI
Celera	4	106,951,724 - 106,966,117 (+)	NCBI		Celera
Cytogenetic Map	4	q34	NCBI

SMYD5
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	12	53,153,509 - 53,166,512 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2A	53,156,264 - 53,169,262 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2A	73,267,007 - 73,280,006 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2A	74,755,794 - 74,768,776 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2A	74,755,794 - 74,768,776 (+)	Ensembl	panpan1.1		panPan2

SMYD5
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	17	49,638,436 - 49,650,231 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	17	49,639,765 - 49,650,182 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	17	49,285,049 - 49,296,844 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	17	50,504,369 - 50,516,165 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	17	50,504,370 - 50,516,117 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	17	49,520,653 - 49,532,448 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	17	49,587,525 - 49,599,320 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	17	50,146,500 - 50,158,285 (-)	NCBI		UU_Cfam_GSD_1.0

Smyd5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024406292	11,559,385 - 11,573,364 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936491	16,997,962 - 17,011,551 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936491	16,997,962 - 17,011,470 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SMYD5
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	69,552,738 - 69,565,978 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	69,552,731 - 69,566,013 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	72,756,041 - 72,769,307 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SMYD5
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	14	33,946,154 - 33,959,571 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	14	33,946,108 - 33,959,285 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666045	78,123,381 - 78,136,576 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Smyd5
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624762	416,229 - 429,741 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624762	416,229 - 429,763 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005385571	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013514725	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013514726	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01024604	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBCQ01129452	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCLAT00000008791 ⟹ ENSCLAP00000008663

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955424	12,408,059 - 12,423,164 (-)	Ensembl

RefSeq Acc Id:

XM_005385571 ⟹ XP_005385628

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955424	12,408,059 - 12,422,424 (-)	NCBI

Sequence:

show sequence

GCGTGCCCAAGATGGCGGCCTCCATGTGCGACGTGTTCTCCTTCTGCGTGGGCGTGGCGGGTTC
GGCCCGGATTGCAGTGGAAGTTCGCTTCGTGAGCAGCGCCAAGGGAAAAGGACTGTTTGCTACA
CAACTGATCCGGAAGGGAGAGACTATATTTGTAGAAAGGCCCCTAGTGGCTGCACAGTTTCTCT
GGAATGCACTTTATCGCTACCGAGCCTGTGACCACTGCCTCCGGGCTCTGGAAAAGGCAGAGGA
GAATGCCCAGAGGCTGACTGGGAAACCAGGCCAGGTTCTCCCTCACCCAGAGCTATGCACTGTG
CGCAAGGACCTCCACCAGAACTGTCCCCACTGCCAGGTGATGTACTGCAGTGCAGAATGTCAGC
TGGCAGCTGCGGAGCAGTACCACCGGGTCCTGTGCCCAGGCCCCTCTCAGGATGACCCCCTGCA
TCCTCTCAATAAGCTGCAGGAGGCATGGAGGAGTATTCACTACCCACCTGAGACTGCAAGCATC
ATGCTGATGGCCCGAATGGTGGCCACAGTGAAGCAGGCCAAGGATAAGGACCGGTGGATCAGGC
TCTTCTCCCAGTTCTGTAACAAAACAGCCAATGAAGAAGAAGAAATTGTCCACAAACTCCTGGG
GGACAAATTCAAGGGCCAACTAGAACTTCTGCGGAGACTCTTCACAGAGGCCCTCTATGAAGAA
GCACTCAGCCAGTGGTTCACTCCGGATGGATTCAGGTCTCTGTTTGCTCTTGTTGGGACCAATG
GTCAAGGAATTGGGACCAGCTCCCTCAGCCAGTGGGTCCATGCCTGTGATGCTCTAGAACTGAA
GCCTCAGGACCGTGAGCAGCTGGACGCCTTCATTGACCAGCTATACAAGGACATCGAGGCAGCT
ACTGGCGAGTTCCTTAACTGTGAAGGGTCTGGCCTCTTTGTGCTTCAGAGCTGCTGCAACCACA
GCTGTGTCCCCAATGCAGAGACGTCCTTCCCCGAAAACAACTTCCTTTTGCATGTCACCGCCCT
GGAGGATATTAGCCCAGGAGAGGAAATCTGTATCAGCTACTTAGACTGCTGTCAGCGGGAGCGC
AGCCGCCACAGCCGCCATAAGATCCTCAGGGAGAACTATCTGTTTGTCTGTTCCTGCCCCAAAT
GCCTGGCAGAGGCTGATGAACCCAATGTGACCTCAGAGGAGGAAGAAGAGGAGGAGGATGAAGG
AGAGCCAGAAGACGCAGAGCTAGGGGATGAGATGACTGATGTGTGATGGTCCCCTCCCTGCAAG
GGGCCCTGCCCCAGATCCTGCTGGAAAAGGGGGCCCTTACCCCCAGAGAAGAGGCTTGGAAGGA
ACGCCCCACTCCCATTGCCTGCTTTCCCTGCTCCAGCACTCTGCCAGAGCATAAGATGAGGGCT
GCATCCGAGGCCCCGCACCCCACACAGACCTCATGCCCTGAGCACTGCTGCTGAGTTGGCTCAG
GCTCTGCCATCACCGAGCCTTCCAGAACTGGCCTCCCCTGAGTTTACTCCACTGTAGGTGTGAG
CGGCTGGAACCAGCGTCTGGGCCTAACCGTGTTTCTTATTCCACACTCACCTGTCCACCGGAGG
CTTCTCCCCTCTCAGCTGATAATTGGCTTATCTTGAGGGGGGTAACAGAGTGTCATATCTCACA
CCACACCAGTCTCATTGAAGTGGAAATGGAAGGTGTGGCACTTCAGCTTCCCTACCTCACACCT
GCCACAGCTATAGCTCACAGGGTGACAGCCTGCTCATGAGCCAGAGGGTAGAGGCAGGAAGACT
GGTCTGAGCCTCCAGAGCACCTTCCCTAAGGCTGGCTGCCAGGGAACACTAGACCAGGGGGATT
TCCCCTCTTTCCCCCCATTCCCACTGTTAGGGAAGTGGAGCTTAACCCCTTCCCTAGACTCCAG
AATCTCTGTACCTTGTGCCTTGTCTCCCAGGCCCTGGCACAGCGGCTGGCCCCACGGGGTGTGG
AAGAGGCCTCTGCCTTCCGGCGGGGGGGTGCCCTTTTTTACACCTTTTTCCCACTGAGGGTTCG
AGCAGTCTGGCTGAGACCTGTGGGAGGGCAGGCCTGTGCTCCTTAGTTTAGGATGCTCGATTCT
TCCTGGGGCCTGTTAAAATGGACCAGTGAAGGGCTCTCCTGGCCTTGGCCTTCATCTTTAGAGT
TTCCCCGGGGGAACACTGAAGTCTTCAGAAACCTAAAGAAGCTGGGCTAGATACTTGGTGATTA
GCCGTCACTGTCCCTTCCTTGCCCCAGATGAGCATCTCTTTCACTCCTGGGTTGGGTGCTGTGG
GCATTATAAGCATCACCCCCAGTTCCTTCCTGCCTACCTTCCCTGAGGGGCGTGCCACATCATC
TTTCTGAGCAATCCCAGGGAAGACAGGTGCCACCCTTCAGGCCCTTCCCTGGCCATGGAGCAAG
GTGGGACCTGCCCATCTGGCTCCCTCACTTGCTGGGTTTTTGCTCCTTTACAGCAGTCAGCACC
CTCTCCTGCCCCACCTGCCCACTTCCTCAATAAAACATGAGTGGCAACA

hide sequence

RefSeq Acc Id:

XM_013514725 ⟹ XP_013370179

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955424	12,409,662 - 12,422,424 (-)	NCBI

Sequence:

show sequence

GCGTGCCCAAGATGGCGGCCTCCATGTGCGACGTGTTCTCCTTCTGCGTGGGCGTGGCGGGTTC
GGCCCGGATTGCAGTGGAAGTTCGCTTCGTGAGCAGCGCCAAGGGAAAAGGACTGTTTGCTACA
CAACTGATCCGGAAGGGAGAGACTATATTTGTAGAAAGGCCCCTAGTGGCTGCACAGTTTCTCT
GGAATGCACTTTATCGCTACCGAGCCTGTGACCACTGCCTCCGGGCTCTGGAAAAGGCAGAGGA
GAATGCCCAGAGGCTGACTGGGAAACCAGGCCAGGTTCTCCCTCACCCAGAGCTATGCACTGTG
CGCAAGGACCTCCACCAGAACTGTCCCCACTGCCAGGTGATGTACTGCAGTGCAGAATGTCAGC
TGGCAGCTGCGGAGCAGTACCACCGGGTCCTGTGCCCAGGCCCCTCTCAGGATGACCCCCTGCA
TCCTCTCAATAAGCTGCAGGAGGCATGGAGGAGTATTCACTACCCACCTGAGACTGCAAGCATC
ATGCTGATGGCCCGAATGGTGGCCACAGTGAAGCAGGCCAAGGATAAGGACCGGTGGATCAGGC
TCTTCTCCCAGTTCTGTAACAAAACAGCCAATGAAGAAGAAGAAATTGTCCACAAACTCCTGGG
GGACAAATTCAAGGGCCAACTAGAACTTCTGCGGAGACTCTTCACAGAGGCCCTCTATGAAGAA
GCACTCAGCCAGTGGTTCACTCCGGATGGATTCAGGTCTCTGTTTGCTCTTGTTGGGACCAATG
GTCAAGGAATTGGGACCAGCTCCCTCAGCCAGTGGGTCCATGCCTGTGATGCTCTAGAACTGAA
GCCTCAGGACCGTGAGCAGCTGGACGCCTTCATTGACCAGCTATACAAGGACATCGAGGCAGCT
ACTGGCGAGTTCCTTAACTGTGAAGGGTCTGGCCTCTTTGTGCTTCAGAGCTGCTGCAACCACA
GCTGTGTCCCCAATGCAGAGACGTCCTTCCCCGAAAACAACTTCCTTTTGCATGTCACCGCCCT
GGAGGATATTAGCCCAGGAGAGGCATGTTCTAATCCCACCCTACTTCAAAAAACAACTCCAGAA
AGCTGCAGAGCAGTGTTTGAGGGACAACTGTGTGTGCAGGTTCCTGTCCCCAGCCTGGATCAAC
AGATCTACAGCTTCTAAGAAAGCGGGAGGTAGTTCTTTGCGGCTTTCTGTGGGGTTCTGGTGTA
GGTTTGGGTGTCCTGGATATGAGTGCAGTGCACAGAGCAAGCAGAATCACACCAAGATAACCTC
TGAGCCAAGTTACAGACCTTGGCCACTGACTGGCTTTCACCATGGCCCGCAGCCACCTATAGGC
TCCCCTCTGTCCCTTGACACTGGCTGCTGAAAGCATGGGAAATGAATTGGGGTAGCCCACCTTC
ACTGCAGGGCAACTCAGGCCTGCCTCCCAGGAACGGGACAGTGGTTGGGGATAGGGCAGTTGTT
GGGGAAGCCCTTATCCTAACTAATGGAAGGTACCAATCTAATTAGCCGAATCCAGCCTATCCTA
ATATGAGACCCTCCCCCCATCTCTCCTC

hide sequence

RefSeq Acc Id:

XM_013514726 ⟹ XP_013370180

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955424	12,410,110 - 12,422,424 (-)	NCBI

Sequence:

show sequence

GCGTGCCCAAGATGGCGGCCTCCATGTGCGACGTGTTCTCCTTCTGCGTGGGCGTGGCGGGTTC
GGCCCGGATTGCAGTGGAAGTTCGCTTCGTGAGCAGCGCCAAGGGAAAAGGACTGTTTGCTACA
CAACTGATCCGGAAGGGAGAGACTATATTTGTAGAAAGGCCCCTAGTGGCTGCACAGTTTCTCT
GGAATGCACTTTATCGCTACCGAGCCTGTGACCACTGCCTCCGGGCTCTGGAAAAGGCAGAGGA
GAATGCCCAGAGGCTGACTGGGAAACCAGGCCAGGTTCTCCCTCACCCAGAGCTATGCACTGTG
CGCAAGGACCTCCACCAGAACTGTCCCCACTGCCAGGTGATGTACTGCAGTGCAGAATGTCAGC
TGGCAGCTGCGGAGCAGTACCACCGGGTCCTGTGCCCAGGCCCCTCTCAGGATGACCCCCTGCA
TCCTCTCAATAAGCTGCAGGAGGCATGGAGGAGTATTCACTACCCACCTGAGACTGCAAGCATC
ATGCTGATGGCCCGAATGGTGGCCACAGTGAAGCAGGCCAAGGATAAGGACCGGTGGATCAGGC
TCTTCTCCCAGTTCTGTAACAAAACAGCCAATGAAGAAGAAGAAATTGTCCACAAACTCCTGGG
GGACAAATTCAAGGGCCAACTAGAACTTCTGCGGAGACTCTTCACAGAGGCCCTCTATGAAGAA
GCACTCAGCCAGTGGTTCACTCCGGATGGATTCAGGTCTCTGTTTGCTCTTGTTGGGACCAATG
GTCAAGGAATTGGGACCAGCTCCCTCAGCCAGTGGGTCCATGCCTGTGATGCTCTAGAACTGAA
GCCTCAGGACCGTGAGCAGCTGGACGCCTTCATTGACCAGCTATACAAGGACATCGAGGCAGCT
ACTGGCGAGTTCCTTAACTGTGAAGGGTCTGGCCTCTTTGTGCTTCAGAGCTGCTGCAACCACA
GCTGTGTCCCCAATGCAGAGACGTCCTTCCCCGAAAACAACTTCCTTTTGCATGTCACCGCCCT
GGAGGATATTAGCCCAGGAGAGCCTGAGTGCTTGCCCATAGGCATGTTCTAATCCCACCCTACT
TCAAAAAACAACTCCAGAAAGCTGCAGAGCAGTGTTTGAGGGACAAC

hide sequence

Protein Sequences


Protein RefSeqs	XP_005385628	(Get FASTA)	NCBI Sequence Viewer
	XP_013370179	(Get FASTA)	NCBI Sequence Viewer
	XP_013370180	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000008663
	ENSCLAP00000008663.1

RefSeq Acc Id:	XP_005385628 ⟸ XM_005385571
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C2V1F6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAASMCDVFSFCVGVAGSARIAVEVRFVSSAKGKGLFATQLIRKGETIFVERPLVAAQFLWNAL YRYRACDHCLRALEKAEENAQRLTGKPGQVLPHPELCTVRKDLHQNCPHCQVMYCSAECQLAAA EQYHRVLCPGPSQDDPLHPLNKLQEAWRSIHYPPETASIMLMARMVATVKQAKDKDRWIRLFSQ FCNKTANEEEEIVHKLLGDKFKGQLELLRRLFTEALYEEALSQWFTPDGFRSLFALVGTNGQGI GTSSLSQWVHACDALELKPQDREQLDAFIDQLYKDIEAATGEFLNCEGSGLFVLQSCCNHSCVP NAETSFPENNFLLHVTALEDISPGEEICISYLDCCQRERSRHSRHKILRENYLFVCSCPKCLAE ADEPNVTSEEEEEEEDEGEPEDAELGDEMTDV hide sequence

RefSeq Acc Id:

XP_013370179 ⟸ XM_013514725

- Peptide Label:

isoform X2

- Sequence:

show sequence

MAASMCDVFSFCVGVAGSARIAVEVRFVSSAKGKGLFATQLIRKGETIFVERPLVAAQFLWNAL
YRYRACDHCLRALEKAEENAQRLTGKPGQVLPHPELCTVRKDLHQNCPHCQVMYCSAECQLAAA
EQYHRVLCPGPSQDDPLHPLNKLQEAWRSIHYPPETASIMLMARMVATVKQAKDKDRWIRLFSQ
FCNKTANEEEEIVHKLLGDKFKGQLELLRRLFTEALYEEALSQWFTPDGFRSLFALVGTNGQGI
GTSSLSQWVHACDALELKPQDREQLDAFIDQLYKDIEAATGEFLNCEGSGLFVLQSCCNHSCVP
NAETSFPENNFLLHVTALEDISPGEACSNPTLLQKTTPESCRAVFEGQLCVQVPVPSLDQQIYS
F

hide sequence

RefSeq Acc Id:

XP_013370180 ⟸ XM_013514726

- Peptide Label:

isoform X3

- Sequence:

show sequence

MAASMCDVFSFCVGVAGSARIAVEVRFVSSAKGKGLFATQLIRKGETIFVERPLVAAQFLWNAL
YRYRACDHCLRALEKAEENAQRLTGKPGQVLPHPELCTVRKDLHQNCPHCQVMYCSAECQLAAA
EQYHRVLCPGPSQDDPLHPLNKLQEAWRSIHYPPETASIMLMARMVATVKQAKDKDRWIRLFSQ
FCNKTANEEEEIVHKLLGDKFKGQLELLRRLFTEALYEEALSQWFTPDGFRSLFALVGTNGQGI
GTSSLSQWVHACDALELKPQDREQLDAFIDQLYKDIEAATGEFLNCEGSGLFVLQSCCNHSCVP
NAETSFPENNFLLHVTALEDISPGEPECLPIGMF

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RefSeq Acc Id:

ENSCLAP00000008663 ⟸ ENSCLAT00000008791

Protein Domains

SET

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000006061	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000008791	ENTREZGENE
	ENSCLAT00000008791.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.220.160	UniProtKB/TrEMBL
	2.170.270.10	UniProtKB/TrEMBL
	6.10.140.2220	UniProtKB/TrEMBL
InterPro	SET_dom	UniProtKB/TrEMBL
	SET_dom_sf	UniProtKB/TrEMBL
	SMYD5_SET	UniProtKB/TrEMBL
NCBI Gene	Smyd5	ENTREZGENE
PANTHER	SET AND MYND DOMAIN-CONTAINING PROTEIN 5	UniProtKB/TrEMBL
	SET AND MYND DOMAIN-CONTAINING PROTEIN 5	UniProtKB/TrEMBL
Pfam	SET	UniProtKB/TrEMBL
PROSITE	SET	UniProtKB/TrEMBL
SMART	SET	UniProtKB/TrEMBL
Superfamily-SCOP	HIT/MYND zinc finger-like	UniProtKB/TrEMBL
	SSF82199	UniProtKB/TrEMBL
UniProt	A0A8C2V1F6	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar