Ube2d2 (ubiquitin conjugating enzyme E2 D2)

Gene: Ube2d2 (ubiquitin conjugating enzyme E2 D2) Chinchilla lanigera

Analyze

Symbol:

Ube2d2

Name:

ubiquitin conjugating enzyme E2 D2

RGD ID:

8709936

Description:

ENCODES a protein that exhibits ubiquitin conjugating enzyme activity (ortholog); ubiquitin protein ligase activity (ortholog); ubiquitin-protein transferase activity (ortholog); INVOLVED IN protein autoubiquitination (ortholog); protein K48-linked ubiquitination (ortholog); protein polyubiquitination (ortholog); PARTICIPATES IN ubiquitin/proteasome degradation pathway; ASSOCIATED WITH autosomal dominant intellectual developmental disorder 31 (ortholog); familial adenomatous polyposis 1 (ortholog); genetic disease (ortholog); FOUND IN protein-containing complex (ortholog); ubiquitin ligase complex (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

ubiquitin-conjugating enzyme E2 D2; ubiquitin-conjugating enzyme E2D 2

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955418	989,802 - 1,006,262 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955418	990,124 - 1,043,544 (-)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autosomal dominant intellectual developmental disorder 31 (ISO)

familial adenomatous polyposis 1 (ISO)

genetic disease (ISO)

Hereditary Neoplastic Syndromes (ISO)

Neurodevelopmental Disorders (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

protein autoubiquitination (ISO)

protein K48-linked ubiquitination (ISO)

protein polyubiquitination (ISO)

protein ubiquitination (ISO)

Cellular Component

protein-containing complex (ISO)

ubiquitin ligase complex (ISO)

Molecular Function

protein binding (ISO)

ubiquitin conjugating enzyme activity (ISO)

ubiquitin protein ligase activity (ISO)

ubiquitin-protein transferase activity (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

ubiquitin/proteasome degradation pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Ube2d2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955418	989,802 - 1,006,262 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955418	990,124 - 1,043,544 (-)	NCBI	ChiLan1.0	ChiLan1.0

UBE2D2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	139,526,240 - 139,628,434 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	139,526,431 - 139,628,434 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	5	138,940,924 - 139,008,019 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	138,920,935 - 138,988,203 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	5	138,920,934 - 138,988,200	NCBI
Celera	5	135,015,760 - 135,083,018 (+)	NCBI		Celera
Cytogenetic Map	5	q31.2	NCBI
HuRef	5	134,083,642 - 134,151,382 (+)	NCBI		HuRef
CHM1_1	5	138,373,349 - 138,440,624 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	5	140,086,420 - 140,153,498 (+)	NCBI		T2T-CHM13v2.0

Ube2d2a
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	18	35,904,612 - 35,940,225 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	18	35,904,611 - 35,942,547 (+)	Ensembl		GRCm39 Ensembl
GRCm38	18	35,771,559 - 35,807,172 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	18	35,771,558 - 35,809,494 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	18	35,931,213 - 35,966,826 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	18	35,897,581 - 35,933,137 (+)	NCBI		MGSCv36	mm8
Celera	18	36,227,229 - 36,263,010 (+)	NCBI		Celera
Cytogenetic Map	18	B2	NCBI
cM Map	18	19.24	NCBI

Ube2d2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	18	27,638,399 - 27,680,386 (+)	NCBI		GRCr8
mRatBN7.2	18	27,364,325 - 27,406,322 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	18	27,364,303 - 27,406,181 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	18	27,491,743 - 27,533,729 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	18	28,253,786 - 28,295,779 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	18	27,588,662 - 27,630,661 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	18	28,561,957 - 28,603,335 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	18	28,594,892 - 28,603,335 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	18	28,273,644 - 28,315,393 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	18	28,426,503 - 28,434,785 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	18	27,096,239 - 27,136,838 (+)	NCBI		Celera
Cytogenetic Map	18	p11	NCBI

UBE2D2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	134,821,488 - 134,889,981 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	132,961,832 - 133,030,281 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	134,927,150 - 134,995,298 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	141,048,385 - 141,115,842 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	141,048,385 - 141,115,842 (+)	Ensembl	panpan1.1		panPan2

UBE2D2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	34,827,994 - 34,884,047 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	34,827,888 - 34,897,412 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	31,929,861 - 31,985,986 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	35,281,731 - 35,338,066 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	35,281,967 - 35,338,066 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	32,334,131 - 32,390,460 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	33,200,956 - 33,257,076 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	33,952,551 - 34,008,349 (+)	NCBI		UU_Cfam_GSD_1.0

Ube2d2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	152,925,200 - 152,993,263 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936531	8,630,516 - 8,684,686 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936531	8,668,954 - 8,686,305 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

UBE2D2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	141,398,065 - 141,459,817 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	141,397,937 - 141,459,821 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	147,425,441 - 147,445,013 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

UBE2D2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	23	42,219,650 - 42,280,931 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	23	42,220,683 - 42,279,298 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666034	35,605,912 - 35,667,810 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ube2d2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624743	32,338,821 - 32,425,478 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624743	32,338,864 - 32,426,220 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005382059	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005382060	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013512968	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013512969	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013512970	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01018699	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01018700	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01018701	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01018702	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01018703	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDI01019168	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCLAT00000006047 ⟹ ENSCLAP00000005945

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955418	989,802 - 1,006,262 (-)	Ensembl

RefSeq Acc Id:

XM_005382059 ⟹ XP_005382116

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955418	990,124 - 1,006,752 (-)	NCBI

Sequence:

show sequence

ATTGCATAGAGAGACCTTGTCTCAGAAATACACACAAAAACAAAAAGGCACTATACTCAACTGT
AGTTCAGTACCAGAGAAGCTGAGGTGGAAGGATAGCTTGAGCTTGGAAATCTAGGACAACCCTG
AGCAACATAATGAGGTTACATCTAAGGAGGCAAGAAAAGATTTGGGGGGCTGGGGTTATAGCAC
ATTGGTAAAGCCACTTGCCTAGCATGTAGCAAACCCTGTGTTTGAGCCCAAGCACTACTAAAAG
CAAAATTTCTCCCCTGCCTCCATAATTGAACTTGGTTTCCTCCAGCATATTAGGCAAGCACTCT
ACCACTAAGCTACACCTTATAACATACCTTTGCACTAAAGAACCCAAAATACTTCAGTTTAGAG
AGTCACCGTGTAGGCTGAGCATGGTAACACATACCTGCAGTCCCAGCACTTGGGAGGCTGAGAC
AGGAAGATGACCGTGAGATTGAGGCTACCCTGAACTACTTAGGGAGACTGTCTCAAAAAAACAA
CAAAAAGATTCATCATCTACTCCTTGGACTTTGAAGGAATGATACTAAAAGAACTTTACCAGAA
TTGAATGACCTGGCACGGGACCCACCAGCACAGTGTTCAGCAGGTCCTGTTGGAGATGATATGT
TCCATTGGCAAGCTACAATAATGGGGCCAAATGATAGTCCCTATCAGGGTGGAGTATTTTTCTT
GACAATTCATTTCCCAACAGATTACCCCTTCAAACCACCTAAGGTTGCATTTACAACAAGAATT
TATCATCCAAATATTAACAGTAATGGCAGCATTTGTCTTGATATTCTACGGTCACAGTGGTCTC
CAGCACTAACTATTTCAAAAGTACTCTTGTCCATCTGTTCTCTGTTGTGCGATCCCAATCCAGA
TGATCCTTTAGTGCCTGAGATTGCTCGGATCTACAAAACAGATAGAGAAAAGTACAACAGAATA
GCTCGGGAATGGACTCAGAAGTATGCGATGTAATTAAAGAAATTATTGGAAAACCTCTACAAAT
AAAGATAGGGGAGCTCTGAAAGAGAAAGTCCTTTTGATTTCCATTTGACTGCTTTCTATGAGCC
CACGCCTCATCTTCCCCTGTGCACATGTTTACCTGATACAGCAGTGCTGCGTGTTGTACATACT
TGGAAACAACAAACTAGAAATACTGTACTTCTGTACCAACATTGCCTCCTAGCAGAGAAGTGTA
TGTGTGACAAGCCAGTTCTTCAGGCATAACCTAGGTGTGAGACTGAAAAGCTTTCCTTACTGAC
GTGAATTTGGTAACAACAAGCTCTTGTGAGGGGTGGTGGGTACATGGTGTGCTTGGATGGGGAA
CAGCTCCACTGACCTGTAGGAGGTATTTTTAAGTGGAATCCGTTTTAAACTCACAACAGTTATG
AAAAGAAAGGTGAAGAACGTGAAGCTGTTTCTGTATTCATTTTATCCTGGAGGACCTACAGCTT
AGGTGAAGTTGTGACCAACCAGAGTAAATTCTACCCACATCCTGGATTTTAAGGTCTAAGTTTA
ACTGGTCAACATTGAAATGGATTGGAGCTATTAGTACATAAAGTGTGACGGGCTTTGTTCCCAA
CTGTTTTACGTCTCTGCCCCTTCAACCTTTATCCTTTCAGCTCCTTTCTCTCCATATTCTTTGG
TTTGTATGTGGTTTCTCAGTTAATACATAGCTAATAGCTCTTATTTTTCTTATGTTTTTAACTG
CTTAGGTCTATTTGGATGTAAGGGTGAAAATTCATTTGATGGAAATACTTGTGTATATTTAAAG
ACCCAATTGCTCCTCTGGAGCTTGTACGTTCAAGAATGATTAATCTGTGTAATAAACTGATTAC
TACAGTCATTACATTTAATTTTGTGTGAATAGGCTTTTTGATTTTAAGAACTTTGTCTAGCTGA
GATTAGTGGTGGATTTTCCCCACTCCTAAAATGTTTTTGTTTATACCGATTGCATTTCAAAATC
ATGAAACAATTCCAGTTTACATAGTAAAAAAAAATCTTGAGAGTAATTTTATTGAACTCTAAGA
GACATAAACTTGAAAACATTTTCATAAAACCTATATGTGCAGCATTTTGGGAACATGACTGTTA
AAATAAGAAATTTGCTTTATTAATGAAGCTAAGCTGCATTTCATCAAAATCTTGTGACATTCCC
TTGGTGCATAAGACGTAAGAACACAAAGGCATTGCTATTTGGAAGTTAAGCCTCTGTGATTGTA
ATTACAGAAGAGCAACTTTGACCAGACCTGGGAAACATGAGCACAATCTTGTATTGGAGAGTCT
GCGTAATTACTTTGCACTAACATTTAGAAGGATGTTCATCCAGTTTTAAATTGTATTGTATGTG
GCTTTTTGAAGTCTTCCCTTGACTTTAGTAAAATGTAGTTTGAAACTTGTAAACAACTTTGTTT
GCCAGAAACATCACTCATGTGAACTCGGCAAGTTACCTTTTCCCTTCTTTTCCTACTCTGACTG
TAAACCAGGCCAGCCTGAAGGCCGTGCCCGACGCTCTCCAGCCATCAGGTTCTTTAGAATGCAT
CTTTACACTCTTGCACAAAAACTGAGGAATAAATGTCCATTGCTTTTGGATTTAAA

hide sequence

RefSeq Acc Id:

XM_005382060 ⟹ XP_005382117

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955418	990,124 - 1,043,544 (-)	NCBI

Sequence:

show sequence

TCGCGGCCGCAGCGACCGCGCGAATTGAATGACCTGGCACGGGACCCACCAGCACAGTGTTCAG
CAGGTCCTGTTGGAGATGATATGTTCCATTGGCAAGCTACAATAATGGGGCCAAATGATAGTCC
CTATCAGGGTGGAGTATTTTTCTTGACAATTCATTTCCCAACAGATTACCCCTTCAAACCACCT
AAGGTTGCATTTACAACAAGAATTTATCATCCAAATATTAACAGTAATGGCAGCATTTGTCTTG
ATATTCTACGGTCACAGTGGTCTCCAGCACTAACTATTTCAAAAGTACTCTTGTCCATCTGTTC
TCTGTTGTGCGATCCCAATCCAGATGATCCTTTAGTGCCTGAGATTGCTCGGATCTACAAAACA
GATAGAGAAAAGTACAACAGAATAGCTCGGGAATGGACTCAGAAGTATGCGATGTAATTAAAGA
AATTATTGGAAAACCTCTACAAATAAAGATAGGGGAGCTCTGAAAGAGAAAGTCCTTTTGATTT
CCATTTGACTGCTTTCTATGAGCCCACGCCTCATCTTCCCCTGTGCACATGTTTACCTGATACA
GCAGTGCTGCGTGTTGTACATACTTGGAAACAACAAACTAGAAATACTGTACTTCTGTACCAAC
ATTGCCTCCTAGCAGAGAAGTGTATGTGTGACAAGCCAGTTCTTCAGGCATAACCTAGGTGTGA
GACTGAAAAGCTTTCCTTACTGACGTGAATTTGGTAACAACAAGCTCTTGTGAGGGGTGGTGGG
TACATGGTGTGCTTGGATGGGGAACAGCTCCACTGACCTGTAGGAGGTATTTTTAAGTGGAATC
CGTTTTAAACTCACAACAGTTATGAAAAGAAAGGTGAAGAACGTGAAGCTGTTTCTGTATTCAT
TTTATCCTGGAGGACCTACAGCTTAGGTGAAGTTGTGACCAACCAGAGTAAATTCTACCCACAT
CCTGGATTTTAAGGTCTAAGTTTAACTGGTCAACATTGAAATGGATTGGAGCTATTAGTACATA
AAGTGTGACGGGCTTTGTTCCCAACTGTTTTACGTCTCTGCCCCTTCAACCTTTATCCTTTCAG
CTCCTTTCTCTCCATATTCTTTGGTTTGTATGTGGTTTCTCAGTTAATACATAGCTAATAGCTC
TTATTTTTCTTATGTTTTTAACTGCTTAGGTCTATTTGGATGTAAGGGTGAAAATTCATTTGAT
GGAAATACTTGTGTATATTTAAAGACCCAATTGCTCCTCTGGAGCTTGTACGTTCAAGAATGAT
TAATCTGTGTAATAAACTGATTACTACAGTCATTACATTTAATTTTGTGTGAATAGGCTTTTTG
ATTTTAAGAACTTTGTCTAGCTGAGATTAGTGGTGGATTTTCCCCACTCCTAAAATGTTTTTGT
TTATACCGATTGCATTTCAAAATCATGAAACAATTCCAGTTTACATAGTAAAAAAAAATCTTGA
GAGTAATTTTATTGAACTCTAAGAGACATAAACTTGAAAACATTTTCATAAAACCTATATGTGC
AGCATTTTGGGAACATGACTGTTAAAATAAGAAATTTGCTTTATTAATGAAGCTAAGCTGCATT
TCATCAAAATCTTGTGACATTCCCTTGGTGCATAAGACGTAAGAACACAAAGGCATTGCTATTT
GGAAGTTAAGCCTCTGTGATTGTAATTACAGAAGAGCAACTTTGACCAGACCTGGGAAACATGA
GCACAATCTTGTATTGGAGAGTCTGCGTAATTACTTTGCACTAACATTTAGAAGGATGTTCATC
CAGTTTTAAATTGTATTGTATGTGGCTTTTTGAAGTCTTCCCTTGACTTTAGTAAAATGTAGTT
TGAAACTTGTAAACAACTTTGTTTGCCAGAAACATCACTCATGTGAACTCGGCAAGTTACCTTT
TCCCTTCTTTTCCTACTCTGACTGTAAACCAGGCCAGCCTGAAGGCCGTGCCCGACGCTCTCCA
GCCATCAGGTTCTTTAGAATGCATCTTTACACTCTTGCACAAAAACTGAGGAATAAATGTCCAT
TGCTTTTGGATTTAAA

hide sequence

RefSeq Acc Id:

XM_013512968 ⟹ XP_013368422

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955418	990,124 - 1,017,546 (-)	NCBI

Sequence:

show sequence

TGAGCACACGGGTAAATGACCTCACGCTTGCCAGGCAGGCACTGCACCACTGAGGAATTGAATG
ACCTGGCACGGGACCCACCAGCACAGTGTTCAGCAGGTCCTGTTGGAGATGATATGTTCCATTG
GCAAGCTACAATAATGGGGCCAAATGATAGTCCCTATCAGGGTGGAGTATTTTTCTTGACAATT
CATTTCCCAACAGATTACCCCTTCAAACCACCTAAGGTTGCATTTACAACAAGAATTTATCATC
CAAATATTAACAGTAATGGCAGCATTTGTCTTGATATTCTACGGTCACAGTGGTCTCCAGCACT
AACTATTTCAAAAGTACTCTTGTCCATCTGTTCTCTGTTGTGCGATCCCAATCCAGATGATCCT
TTAGTGCCTGAGATTGCTCGGATCTACAAAACAGATAGAGAAAAGTACAACAGAATAGCTCGGG
AATGGACTCAGAAGTATGCGATGTAATTAAAGAAATTATTGGAAAACCTCTACAAATAAAGATA
GGGGAGCTCTGAAAGAGAAAGTCCTTTTGATTTCCATTTGACTGCTTTCTATGAGCCCACGCCT
CATCTTCCCCTGTGCACATGTTTACCTGATACAGCAGTGCTGCGTGTTGTACATACTTGGAAAC
AACAAACTAGAAATACTGTACTTCTGTACCAACATTGCCTCCTAGCAGAGAAGTGTATGTGTGA
CAAGCCAGTTCTTCAGGCATAACCTAGGTGTGAGACTGAAAAGCTTTCCTTACTGACGTGAATT
TGGTAACAACAAGCTCTTGTGAGGGGTGGTGGGTACATGGTGTGCTTGGATGGGGAACAGCTCC
ACTGACCTGTAGGAGGTATTTTTAAGTGGAATCCGTTTTAAACTCACAACAGTTATGAAAAGAA
AGGTGAAGAACGTGAAGCTGTTTCTGTATTCATTTTATCCTGGAGGACCTACAGCTTAGGTGAA
GTTGTGACCAACCAGAGTAAATTCTACCCACATCCTGGATTTTAAGGTCTAAGTTTAACTGGTC
AACATTGAAATGGATTGGAGCTATTAGTACATAAAGTGTGACGGGCTTTGTTCCCAACTGTTTT
ACGTCTCTGCCCCTTCAACCTTTATCCTTTCAGCTCCTTTCTCTCCATATTCTTTGGTTTGTAT
GTGGTTTCTCAGTTAATACATAGCTAATAGCTCTTATTTTTCTTATGTTTTTAACTGCTTAGGT
CTATTTGGATGTAAGGGTGAAAATTCATTTGATGGAAATACTTGTGTATATTTAAAGACCCAAT
TGCTCCTCTGGAGCTTGTACGTTCAAGAATGATTAATCTGTGTAATAAACTGATTACTACAGTC
ATTACATTTAATTTTGTGTGAATAGGCTTTTTGATTTTAAGAACTTTGTCTAGCTGAGATTAGT
GGTGGATTTTCCCCACTCCTAAAATGTTTTTGTTTATACCGATTGCATTTCAAAATCATGAAAC
AATTCCAGTTTACATAGTAAAAAAAAATCTTGAGAGTAATTTTATTGAACTCTAAGAGACATAA
ACTTGAAAACATTTTCATAAAACCTATATGTGCAGCATTTTGGGAACATGACTGTTAAAATAAG
AAATTTGCTTTATTAATGAAGCTAAGCTGCATTTCATCAAAATCTTGTGACATTCCCTTGGTGC
ATAAGACGTAAGAACACAAAGGCATTGCTATTTGGAAGTTAAGCCTCTGTGATTGTAATTACAG
AAGAGCAACTTTGACCAGACCTGGGAAACATGAGCACAATCTTGTATTGGAGAGTCTGCGTAAT
TACTTTGCACTAACATTTAGAAGGATGTTCATCCAGTTTTAAATTGTATTGTATGTGGCTTTTT
GAAGTCTTCCCTTGACTTTAGTAAAATGTAGTTTGAAACTTGTAAACAACTTTGTTTGCCAGAA
ACATCACTCATGTGAACTCGGCAAGTTACCTTTTCCCTTCTTTTCCTACTCTGACTGTAAACCA
GGCCAGCCTGAAGGCCGTGCCCGACGCTCTCCAGCCATCAGGTTCTTTAGAATGCATCTTTACA
CTCTTGCACAAAAACTGAGGAATAAATGTCCATTGCTTTTGGATTTAAA

hide sequence

RefSeq Acc Id:

XM_013512969 ⟹ XP_013368423

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955418	990,124 - 1,042,436 (-)	NCBI

Sequence:

show sequence

CCGTGCGGGCCGGGTCTCGGACCTCACGCTTGCCAGGCAGGCACTGCACCACTGAGGAATTGAA
TGACCTGGCACGGGACCCACCAGCACAGTGTTCAGCAGGTCCTGTTGGAGATGATATGTTCCAT
TGGCAAGCTACAATAATGGGGCCAAATGATAGTCCCTATCAGGGTGGAGTATTTTTCTTGACAA
TTCATTTCCCAACAGATTACCCCTTCAAACCACCTAAGGTTGCATTTACAACAAGAATTTATCA
TCCAAATATTAACAGTAATGGCAGCATTTGTCTTGATATTCTACGGTCACAGTGGTCTCCAGCA
CTAACTATTTCAAAAGTACTCTTGTCCATCTGTTCTCTGTTGTGCGATCCCAATCCAGATGATC
CTTTAGTGCCTGAGATTGCTCGGATCTACAAAACAGATAGAGAAAAGTACAACAGAATAGCTCG
GGAATGGACTCAGAAGTATGCGATGTAATTAAAGAAATTATTGGAAAACCTCTACAAATAAAGA
TAGGGGAGCTCTGAAAGAGAAAGTCCTTTTGATTTCCATTTGACTGCTTTCTATGAGCCCACGC
CTCATCTTCCCCTGTGCACATGTTTACCTGATACAGCAGTGCTGCGTGTTGTACATACTTGGAA
ACAACAAACTAGAAATACTGTACTTCTGTACCAACATTGCCTCCTAGCAGAGAAGTGTATGTGT
GACAAGCCAGTTCTTCAGGCATAACCTAGGTGTGAGACTGAAAAGCTTTCCTTACTGACGTGAA
TTTGGTAACAACAAGCTCTTGTGAGGGGTGGTGGGTACATGGTGTGCTTGGATGGGGAACAGCT
CCACTGACCTGTAGGAGGTATTTTTAAGTGGAATCCGTTTTAAACTCACAACAGTTATGAAAAG
AAAGGTGAAGAACGTGAAGCTGTTTCTGTATTCATTTTATCCTGGAGGACCTACAGCTTAGGTG
AAGTTGTGACCAACCAGAGTAAATTCTACCCACATCCTGGATTTTAAGGTCTAAGTTTAACTGG
TCAACATTGAAATGGATTGGAGCTATTAGTACATAAAGTGTGACGGGCTTTGTTCCCAACTGTT
TTACGTCTCTGCCCCTTCAACCTTTATCCTTTCAGCTCCTTTCTCTCCATATTCTTTGGTTTGT
ATGTGGTTTCTCAGTTAATACATAGCTAATAGCTCTTATTTTTCTTATGTTTTTAACTGCTTAG
GTCTATTTGGATGTAAGGGTGAAAATTCATTTGATGGAAATACTTGTGTATATTTAAAGACCCA
ATTGCTCCTCTGGAGCTTGTACGTTCAAGAATGATTAATCTGTGTAATAAACTGATTACTACAG
TCATTACATTTAATTTTGTGTGAATAGGCTTTTTGATTTTAAGAACTTTGTCTAGCTGAGATTA
GTGGTGGATTTTCCCCACTCCTAAAATGTTTTTGTTTATACCGATTGCATTTCAAAATCATGAA
ACAATTCCAGTTTACATAGTAAAAAAAAATCTTGAGAGTAATTTTATTGAACTCTAAGAGACAT
AAACTTGAAAACATTTTCATAAAACCTATATGTGCAGCATTTTGGGAACATGACTGTTAAAATA
AGAAATTTGCTTTATTAATGAAGCTAAGCTGCATTTCATCAAAATCTTGTGACATTCCCTTGGT
GCATAAGACGTAAGAACACAAAGGCATTGCTATTTGGAAGTTAAGCCTCTGTGATTGTAATTAC
AGAAGAGCAACTTTGACCAGACCTGGGAAACATGAGCACAATCTTGTATTGGAGAGTCTGCGTA
ATTACTTTGCACTAACATTTAGAAGGATGTTCATCCAGTTTTAAATTGTATTGTATGTGGCTTT
TTGAAGTCTTCCCTTGACTTTAGTAAAATGTAGTTTGAAACTTGTAAACAACTTTGTTTGCCAG
AAACATCACTCATGTGAACTCGGCAAGTTACCTTTTCCCTTCTTTTCCTACTCTGACTGTAAAC
CAGGCCAGCCTGAAGGCCGTGCCCGACGCTCTCCAGCCATCAGGTTCTTTAGAATGCATCTTTA
CACTCTTGCACAAAAACTGAGGAATAAATGTCCATTGCTTTTGGATTTAAA

hide sequence

RefSeq Acc Id:

XM_013512970 ⟹ XP_013368424

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955418	990,124 - 1,006,753 (-)	NCBI

Sequence:

show sequence

CATTGCATAGAGAGACCTTGTCTCAGAAATACACACAAAAACAAAAAGGCACTATACTCAACTG
TAGTTCAGTACCAGAGAAGCTGAGGTGGAAGGATAGCTTGAGCTTGGAAATCTAGGACAACCCT
GAGCAACATAATGAGGTTACATCTAAGGAGGCAAGAAAAGATTTGGGGGGCTGGGGTTATAGCA
CATTGGTAAAGCCACTTGCCTAGCATGTAGCAAACCCTGTGTTTGAGCCCAAGCACTACTAAAA
GCAAAATTTCTCCCCTGCCTCCATAATTGAACTTGGTTTCCTCCAGCATATTAGGCAAGCACTC
TACCACTAAGCTACACCTTATAACATACCTTTGCACTAAAGAACCCAAAATACTTCAGTTTAGA
GAGTCACCGTGTAGGCTGAGCATGGTAACACATACCTGCAGTCCCAGCACTTGGGAGGCTGAGA
CAGGAAGATGACCGTGAGATTGAGGCTACCCTGAACTACTTAGGGAGACTGTCTCAAAAAAACA
ACAAAAAGATTCATCATCTACTCCTTGGACTTTGAAGGAATGATACTAAAAGAACTTTACCAGA
ATTGAATGACCTGGCACGGGACCCACCAGCACAGTGTTCAGCAGGTCCTGTTGGAGATGATAAC
AGAGTCTTGCTAAATTGCCAAGGAGTGCTGGAACTTGGGATTCTTCTGCCTCACCTTCTCAGAG
TAATGTGAGATTACAGTGTTCCATTGGCAAGCTACAATAATGGGGCCAAATGATAGTCCCTATC
AGGGTGGAGTATTTTTCTTGACAATTCATTTCCCAACAGATTACCCCTTCAAACCACCTAAGGT
TGCATTTACAACAAGAATTTATCATCCAAATATTAACAGTAATGGCAGCATTTGTCTTGATATT
CTACGGTCACAGTGGTCTCCAGCACTAACTATTTCAAAAGTACTCTTGTCCATCTGTTCTCTGT
TGTGCGATCCCAATCCAGATGATCCTTTAGTGCCTGAGATTGCTCGGATCTACAAAACAGATAG
AGAAAAGTACAACAGAATAGCTCGGGAATGGACTCAGAAGTATGCGATGTAATTAAAGAAATTA
TTGGAAAACCTCTACAAATAAAGATAGGGGAGCTCTGAAAGAGAAAGTCCTTTTGATTTCCATT
TGACTGCTTTCTATGAGCCCACGCCTCATCTTCCCCTGTGCACATGTTTACCTGATACAGCAGT
GCTGCGTGTTGTACATACTTGGAAACAACAAACTAGAAATACTGTACTTCTGTACCAACATTGC
CTCCTAGCAGAGAAGTGTATGTGTGACAAGCCAGTTCTTCAGGCATAACCTAGGTGTGAGACTG
AAAAGCTTTCCTTACTGACGTGAATTTGGTAACAACAAGCTCTTGTGAGGGGTGGTGGGTACAT
GGTGTGCTTGGATGGGGAACAGCTCCACTGACCTGTAGGAGGTATTTTTAAGTGGAATCCGTTT
TAAACTCACAACAGTTATGAAAAGAAAGGTGAAGAACGTGAAGCTGTTTCTGTATTCATTTTAT
CCTGGAGGACCTACAGCTTAGGTGAAGTTGTGACCAACCAGAGTAAATTCTACCCACATCCTGG
ATTTTAAGGTCTAAGTTTAACTGGTCAACATTGAAATGGATTGGAGCTATTAGTACATAAAGTG
TGACGGGCTTTGTTCCCAACTGTTTTACGTCTCTGCCCCTTCAACCTTTATCCTTTCAGCTCCT
TTCTCTCCATATTCTTTGGTTTGTATGTGGTTTCTCAGTTAATACATAGCTAATAGCTCTTATT
TTTCTTATGTTTTTAACTGCTTAGGTCTATTTGGATGTAAGGGTGAAAATTCATTTGATGGAAA
TACTTGTGTATATTTAAAGACCCAATTGCTCCTCTGGAGCTTGTACGTTCAAGAATGATTAATC
TGTGTAATAAACTGATTACTACAGTCATTACATTTAATTTTGTGTGAATAGGCTTTTTGATTTT
AAGAACTTTGTCTAGCTGAGATTAGTGGTGGATTTTCCCCACTCCTAAAATGTTTTTGTTTATA
CCGATTGCATTTCAAAATCATGAAACAATTCCAGTTTACATAGTAAAAAAAAATCTTGAGAGTA
ATTTTATTGAACTCTAAGAGACATAAACTTGAAAACATTTTCATAAAACCTATATGTGCAGCAT
TTTGGGAACATGACTGTTAAAATAAGAAATTTGCTTTATTAATGAAGCTAAGCTGCATTTCATC
AAAATCTTGTGACATTCCCTTGGTGCATAAGACGTAAGAACACAAAGGCATTGCTATTTGGAAG
TTAAGCCTCTGTGATTGTAATTACAGAAGAGCAACTTTGACCAGACCTGGGAAACATGAGCACA
ATCTTGTATTGGAGAGTCTGCGTAATTACTTTGCACTAACATTTAGAAGGATGTTCATCCAGTT
TTAAATTGTATTGTATGTGGCTTTTTGAAGTCTTCCCTTGACTTTAGTAAAATGTAGTTTGAAA
CTTGTAAACAACTTTGTTTGCCAGAAACATCACTCATGTGAACTCGGCAAGTTACCTTTTCCCT
TCTTTTCCTACTCTGACTGTAAACCAGGCCAGCCTGAAGGCCGTGCCCGACGCTCTCCAGCCAT
CAGGTTCTTTAGAATGCATCTTTACACTCTTGCACAAAAACTGAGGAATAAATGTCCATTGCTT
TTGGATTTAAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005382116	(Get FASTA)	NCBI Sequence Viewer
	XP_005382117	(Get FASTA)	NCBI Sequence Viewer
	XP_013368422	(Get FASTA)	NCBI Sequence Viewer
	XP_013368423	(Get FASTA)	NCBI Sequence Viewer
	XP_013368424	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000005945
	ENSCLAP00000005945.1

RefSeq Acc Id:	XP_005382117 ⟸ XM_005382060
- Peptide Label:	isoform X2
- Sequence:	show sequence MFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQW SPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM hide sequence

RefSeq Acc Id:	XP_005382116 ⟸ XM_005382059
- Peptide Label:	isoform X2
- Sequence:	show sequence MFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQW SPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM hide sequence

RefSeq Acc Id:	XP_013368423 ⟸ XM_013512969
- Peptide Label:	isoform X2
- Sequence:	show sequence MFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQW SPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM hide sequence

RefSeq Acc Id:	XP_013368422 ⟸ XM_013512968
- Peptide Label:	isoform X1
- Sequence:	show sequence MTSRLPGRHCTTEELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTD YPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI ARIYKTDREKYNRIAREWTQKYAM hide sequence

RefSeq Acc Id:	XP_013368424 ⟸ XM_013512970
- Peptide Label:	isoform X3
- Sequence:	show sequence MGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISK VLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM hide sequence

RefSeq Acc Id:

ENSCLAP00000005945 ⟸ ENSCLAT00000006047

Protein Domains

UBC core

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000004214	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000006047	ENTREZGENE
	ENSCLAT00000006047.1	UniProtKB/TrEMBL
Gene3D-CATH	3.10.110.10	UniProtKB/TrEMBL
InterPro	UBQ-conjugat_E2	UniProtKB/TrEMBL
	UBQ-conjugating_AS	UniProtKB/TrEMBL
	UBQ-conjugating_enzyme/RWD	UniProtKB/TrEMBL
NCBI Gene	Ube2d2	ENTREZGENE
PANTHER	UBIQUITIN-CONJUGATING ENZYME E2	UniProtKB/TrEMBL
	UBIQUITIN-CONJUGATING ENZYME E2 D2	UniProtKB/TrEMBL
Pfam	UQ_con	UniProtKB/TrEMBL
PROSITE	UBC_1	UniProtKB/TrEMBL
	UBC_2	UniProtKB/TrEMBL
SMART	UBCc	UniProtKB/TrEMBL
Superfamily-SCOP	SSF54495	UniProtKB/TrEMBL
UniProt	A0A8C2UWT3_CHILA	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-08-03	Ube2d2	ubiquitin conjugating enzyme E2 D2		ubiquitin-conjugating enzyme E2D 2	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

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Imported Disease Annotations - ClinVar

RGD Manual Annotations