Usp19 (ubiquitin specific peptidase 19) - Rat Genome Database

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Gene: Usp19 (ubiquitin specific peptidase 19) Chinchilla lanigera
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Symbol: Usp19
Name: ubiquitin specific peptidase 19
RGD ID: 8709808
Description: ENCODES a protein that exhibits Hsp90 protein binding (ortholog); Lys48-specific deubiquitinase activity (ortholog); thiol-dependent deubiquitinase (ortholog); INVOLVED IN negative regulation of proteasomal protein catabolic process (ortholog); negative regulation of skeletal muscle tissue development (ortholog); positive regulation of cell cycle process (ortholog); ASSOCIATED WITH Aicardi-Goutieres Syndrome 1 (ortholog); Generalized Epilepsy (ortholog); long QT syndrome (ortholog); FOUND IN cytosol (ortholog); endoplasmic reticulum membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: ubiquitin carboxyl-terminal hydrolase 19
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555321,104,591 - 1,113,567 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555321,104,212 - 1,115,267 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References


Genomics

Comparative Map Data
Usp19
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555321,104,591 - 1,113,567 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555321,104,212 - 1,115,267 (-)NCBIChiLan1.0ChiLan1.0
USP19
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl349,108,046 - 49,120,938 (-)EnsemblGRCh38hg38GRCh38
GRCh38349,108,050 - 49,120,933 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37349,145,483 - 49,158,256 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36349,121,112 - 49,133,217 (-)NCBINCBI36hg18NCBI36
Build 34349,121,111 - 49,133,217NCBI
Celera349,103,060 - 49,115,165 (-)NCBI
Cytogenetic Map3p21.31NCBI
HuRef349,204,015 - 49,216,907 (-)NCBIHuRef
CHM1_1349,098,226 - 49,111,118 (-)NCBICHM1_1
Usp19
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399108,367,806 - 108,379,536 (+)NCBIGRCm39mm39
GRCm39 Ensembl9108,367,801 - 108,379,536 (+)Ensembl
GRCm389108,490,607 - 108,502,337 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9108,490,602 - 108,502,337 (+)EnsemblGRCm38mm10GRCm38
MGSCv379108,393,007 - 108,404,668 (+)NCBIGRCm37mm9NCBIm37
MGSCv369108,348,851 - 108,359,802 (+)NCBImm8
Celera9108,100,140 - 108,111,769 (+)NCBICelera
Cytogenetic Map9F2NCBI
Usp19
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.28109,190,727 - 109,201,761 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl8109,190,724 - 109,201,741 (+)Ensembl
Rnor_6.08117,280,690 - 117,291,729 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8117,280,705 - 117,291,351 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08116,625,419 - 116,636,432 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera8108,488,932 - 108,497,573 (+)ENTREZGENECelera
Cytogenetic Map8q32NCBI
USP19
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1350,112,271 - 50,125,114 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl350,100,216 - 50,125,112 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0349,032,373 - 49,045,238 (-)NCBIMhudiblu_PPA_v0panPan3
USP19
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12040,062,802 - 40,074,221 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2040,064,599 - 40,074,082 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2039,980,975 - 39,992,470 (+)NCBI
ROS_Cfam_1.02040,419,685 - 40,431,184 (+)NCBI
UMICH_Zoey_3.12039,786,538 - 39,798,032 (+)NCBI
UNSW_CanFamBas_1.02040,190,048 - 40,201,538 (+)NCBI
UU_Cfam_GSD_1.02040,470,345 - 40,481,844 (+)NCBI
Usp19
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560264,054,119 - 64,065,492 (-)NCBI
SpeTri2.0NW_004936529814,649 - 826,008 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
USP19
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1331,726,731 - 31,738,770 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11331,726,668 - 31,738,135 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21334,958,907 - 34,968,638 (-)NCBISscrofa10.2Sscrofa10.2susScr3
USP19
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12210,510,554 - 10,523,576 (-)NCBI
ChlSab1.1 Ensembl2210,510,423 - 10,523,487 (-)Ensembl
Vero_WHO_p1.0NW_023666041156,558,381 - 156,571,234 (+)NCBI
Usp19
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247303,134,419 - 3,145,512 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000013858   ⟹   ENSCLAP00000013703
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555321,104,591 - 1,113,567 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000013859   ⟹   ENSCLAP00000013704
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555321,104,591 - 1,113,567 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000013860   ⟹   ENSCLAP00000013705
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555321,105,135 - 1,113,567 (-)Ensembl
RefSeq Acc Id: XM_005410189   ⟹   XP_005410246
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555321,104,852 - 1,115,267 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005410190   ⟹   XP_005410247
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555321,104,212 - 1,115,265 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005410191   ⟹   XP_005410248
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555321,104,212 - 1,115,266 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013507630   ⟹   XP_013363084
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555321,104,852 - 1,115,267 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005410246 (Get FASTA)   NCBI Sequence Viewer  
  XP_005410247 (Get FASTA)   NCBI Sequence Viewer  
  XP_005410248 (Get FASTA)   NCBI Sequence Viewer  
  XP_013363084 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005410248   ⟸   XM_005410191
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_005410247   ⟸   XM_005410190
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_005410246   ⟸   XM_005410189
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013363084   ⟸   XM_013507630
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSCLAP00000013704   ⟸   ENSCLAT00000013859
RefSeq Acc Id: ENSCLAP00000013703   ⟸   ENSCLAT00000013858
RefSeq Acc Id: ENSCLAP00000013705   ⟸   ENSCLAT00000013860


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000009469 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000013703 ENTREZGENE
  ENSCLAP00000013704 ENTREZGENE
  ENSCLAP00000013705 ENTREZGENE
Ensembl Transcript ENSCLAT00000013858 ENTREZGENE
  ENSCLAT00000013859 ENTREZGENE
  ENSCLAT00000013860 ENTREZGENE
NCBI Gene Usp19 ENTREZGENE