Arfgef1 (ADP ribosylation factor guanine nucleotide exchange factor 1) - Rat Genome Database

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Gene: Arfgef1 (ADP ribosylation factor guanine nucleotide exchange factor 1) Chinchilla lanigera
Analyze
Symbol: Arfgef1
Name: ADP ribosylation factor guanine nucleotide exchange factor 1
RGD ID: 8709757
Description: ENCODES a protein that exhibits GTPase activator activity (ortholog); guanyl-nucleotide exchange factor activity (ortholog); myosin binding (ortholog); INVOLVED IN endomembrane system organization (ortholog); Golgi organization (ortholog); negative regulation of actin filament polymerization (ortholog); ASSOCIATED WITH Developmental Disabilities (ortholog); epilepsy (ortholog); Joubert syndrome 21 (ortholog); FOUND IN cytosol (ortholog); Golgi apparatus (ortholog); Golgi membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: ADP-ribosylation factor guanine nucleotide-exchange factor 1 (brefeldin A-inhibited); brefeldin A-inhibited guanine nucleotide-exchange protein 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544411,986,595 - 12,110,172 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544411,986,595 - 12,110,172 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References


Genomics

Comparative Map Data
Arfgef1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544411,986,595 - 12,110,172 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544411,986,595 - 12,110,172 (+)NCBIChiLan1.0ChiLan1.0
ARFGEF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl867,173,511 - 67,343,781 (-)EnsemblGRCh38hg38GRCh38
GRCh38867,174,298 - 67,343,824 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37868,109,893 - 68,256,016 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36868,272,451 - 68,418,466 (-)NCBINCBI36hg18NCBI36
Build 34868,272,450 - 68,418,466NCBI
Celera864,103,297 - 64,249,319 (-)NCBI
Cytogenetic Map8q13.2NCBI
HuRef863,601,813 - 63,748,371 (-)NCBIHuRef
CHM1_1868,165,896 - 68,311,968 (-)NCBICHM1_1
Arfgef1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39110,207,732 - 10,303,306 (-)NCBIGRCm39mm39
GRCm39 Ensembl110,207,796 - 10,302,895 (-)Ensembl
GRCm38110,137,507 - 10,232,670 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl110,137,571 - 10,232,670 (-)EnsemblGRCm38mm10GRCm38
MGSCv37110,127,588 - 10,222,751 (-)NCBIGRCm37mm9NCBIm37
MGSCv36110,122,721 - 10,218,159 (-)NCBImm8
Celera110,111,100 - 10,206,279 (-)NCBICelera
Cytogenetic Map1A2NCBI
Arfgef1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.258,982,061 - 9,076,326 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl58,981,540 - 9,076,326 (+)Ensembl
Rnor_6.058,666,046 - 8,760,458 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl58,666,200 - 8,760,458 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0513,474,381 - 13,568,680 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.458,498,644 - 8,592,918 (+)NCBIRGSC3.4rn4RGSC3.4
Celera58,494,495 - 8,587,878 (+)NCBICelera
Cytogenetic Map5q11NCBI
ARFGEF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1865,402,117 - 65,546,014 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl865,403,386 - 65,545,789 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0863,740,512 - 63,884,189 (-)NCBIMhudiblu_PPA_v0panPan3
ARFGEF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12916,712,872 - 16,852,478 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2916,708,820 - 16,852,844 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2917,028,251 - 17,168,331 (-)NCBI
ROS_Cfam_1.02916,793,854 - 16,933,903 (-)NCBI
UMICH_Zoey_3.12916,825,243 - 16,966,723 (-)NCBI
UNSW_CanFamBas_1.02916,925,119 - 17,065,181 (-)NCBI
UU_Cfam_GSD_1.02917,182,796 - 17,322,945 (-)NCBI
Arfgef1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530367,870,517 - 67,978,189 (-)NCBI
SpeTri2.0NW_0049364966,807,388 - 6,914,960 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARFGEF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl467,466,014 - 67,639,442 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1467,465,517 - 67,613,611 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2473,526,804 - 73,674,463 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ARFGEF1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1863,058,504 - 63,204,238 (-)NCBI
ChlSab1.1 Ensembl863,057,200 - 63,204,292 (-)Ensembl
Vero_WHO_p1.0NW_02366603978,298,523 - 78,446,510 (+)NCBI
Arfgef1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474424,010,609 - 24,144,474 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000005489   ⟹   ENSCLAP00000005393
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495544411,986,595 - 12,110,172 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000005490   ⟹   ENSCLAP00000005394
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495544411,986,674 - 12,108,904 (+)Ensembl
RefSeq Acc Id: XM_005392122   ⟹   XP_005392179
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495544411,986,595 - 12,110,172 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005392179 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005392179   ⟸   XM_005392122
- Sequence:
RefSeq Acc Id: ENSCLAP00000005393   ⟸   ENSCLAT00000005489
RefSeq Acc Id: ENSCLAP00000005394   ⟸   ENSCLAT00000005490


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000003828 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000005393 ENTREZGENE
Ensembl Transcript ENSCLAT00000005489 ENTREZGENE
NCBI Gene Arfgef1 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Arfgef1  ADP ribosylation factor guanine nucleotide exchange factor 1    ADP-ribosylation factor guanine nucleotide-exchange factor 1 (brefeldin A-inhibited)  Symbol and/or name change 5135510 APPROVED