Slc16a1 (solute carrier family 16 member 1) - Rat Genome Database

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Gene: Slc16a1 (solute carrier family 16 member 1) Chinchilla lanigera
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Symbol: Slc16a1
Name: solute carrier family 16 member 1
RGD ID: 8707178
Description: ENCODES a protein that exhibits carboxylic acid transmembrane transporter activity (ortholog); identical protein binding (ortholog); lactate transmembrane transporter activity (ortholog); INVOLVED IN behavioral response to nutrient (ortholog); carboxylic acid transmembrane transport (ortholog); cellular response to organic cyclic compound (ortholog); ASSOCIATED WITH amenorrhea (ortholog); Colonic Neoplasms (ortholog); COVID-19 (ortholog); FOUND IN apical plasma membrane (ortholog); basal plasma membrane (ortholog); basolateral plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: monocarboxylate transporter 1; solute carrier family 16 (monocarboxylate transporter), member 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543516,334,793 - 16,342,552 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543516,334,382 - 16,361,737 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References


Genomics

Comparative Map Data
Slc16a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543516,334,793 - 16,342,552 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543516,334,382 - 16,361,737 (-)NCBIChiLan1.0ChiLan1.0
SLC16A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1112,911,847 - 112,957,593 (-)EnsemblGRCh38hg38GRCh38
GRCh381112,911,847 - 112,956,196 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371113,454,469 - 113,498,818 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361113,255,992 - 113,300,498 (-)NCBINCBI36hg18NCBI36
Build 341113,166,895 - 113,210,847NCBI
Celera1111,683,316 - 111,727,817 (-)NCBI
Cytogenetic Map1p13.2NCBI
HuRef1111,313,328 - 111,357,846 (-)NCBIHuRef
CHM1_11113,569,526 - 113,614,046 (-)NCBICHM1_1
Slc16a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393104,545,980 - 104,565,778 (+)NCBIGRCm39mm39
GRCm39 Ensembl3104,545,984 - 104,565,778 (+)Ensembl
GRCm383104,638,664 - 104,658,462 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3104,638,668 - 104,658,462 (+)EnsemblGRCm38mm10GRCm38
MGSCv373104,442,591 - 104,462,385 (+)NCBIGRCm37mm9NCBIm37
MGSCv363104,767,729 - 104,787,523 (+)NCBImm8
Celera3106,835,859 - 106,855,656 (+)NCBICelera
Cytogenetic Map3F2.2NCBI
Slc16a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22192,123,755 - 192,144,617 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl2192,124,289 - 192,144,611 (+)Ensembl
Rnor_6.02207,108,552 - 207,129,352 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2207,108,552 - 207,128,554 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02226,529,294 - 226,549,303 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42199,860,341 - 199,879,856 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12199,823,090 - 199,843,400 (+)NCBI
Celera2184,591,461 - 184,610,976 (+)NCBICelera
Cytogenetic Map2q34NCBI
SLC16A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11124,755,250 - 124,800,032 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1124,755,250 - 124,800,032 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01115,555,561 - 115,600,302 (-)NCBIMhudiblu_PPA_v0panPan3
SLC16A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11762,636,600 - 62,690,491 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1762,622,902 - 62,787,481 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1762,150,910 - 62,209,599 (+)NCBI
ROS_Cfam_1.01763,810,274 - 63,868,497 (+)NCBI
UMICH_Zoey_3.11762,545,706 - 62,604,231 (+)NCBI
UNSW_CanFamBas_1.01762,603,038 - 62,661,526 (+)NCBI
UU_Cfam_GSD_1.01763,362,876 - 63,421,192 (+)NCBI
LOC101966363
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505816,016,206 - 16,029,442 (+)NCBI
SpeTri2.0NW_0049366901,448,289 - 1,461,525 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC16A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4107,494,463 - 107,641,703 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14107,510,920 - 107,547,609 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24117,603,634 - 117,614,944 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC16A1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12020,694,222 - 20,741,542 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl2020,727,199 - 20,739,979 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603823,493,479 - 23,537,747 (+)NCBIVero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000010044   ⟹   ENSCLAP00000009914
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495543516,334,793 - 16,342,552 (-)Ensembl
RefSeq Acc Id: XM_005388972   ⟹   XP_005389029
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543516,334,382 - 16,361,737 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005388973   ⟹   XP_005389030
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543516,334,382 - 16,361,200 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005388975   ⟹   XP_005389032
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543516,334,382 - 16,361,737 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005389029 (Get FASTA)   NCBI Sequence Viewer  
  XP_005389030 (Get FASTA)   NCBI Sequence Viewer  
  XP_005389032 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005389029   ⟸   XM_005388972
- Sequence:
RefSeq Acc Id: XP_005389032   ⟸   XM_005388975
- Sequence:
RefSeq Acc Id: XP_005389030   ⟸   XM_005388973
- Sequence:
RefSeq Acc Id: ENSCLAP00000009914   ⟸   ENSCLAT00000010044


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000006864 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000009914 ENTREZGENE
Ensembl Transcript ENSCLAT00000010044 ENTREZGENE
NCBI Gene LOC102007930 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Slc16a1  solute carrier family 16 member 1    solute carrier family 16 (monocarboxylate transporter), member 1  Symbol and/or name change 5135510 APPROVED
2015-08-25 Slc16a1  solute carrier family 16 (monocarboxylate transporter), member 1  LOC102007930  monocarboxylate transporter 1-like  Symbol and/or name change 5135510 APPROVED