Thap4 (THAP domain containing 4) - Rat Genome Database
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Gene: Thap4 (THAP domain containing 4) Chinchilla lanigera
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Symbol: Thap4
Name: THAP domain containing 4
RGD ID: 8707162
Description: ENCODES a protein that exhibits heme binding (ortholog); identical protein binding (ortholog); nitric oxide binding (ortholog); INVOLVED IN nitrate metabolic process (ortholog); tyrosine metabolic process (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: THAP domain-containing protein 4
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955542195,088 - 217,831 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955542192,888 - 217,985 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References


Genomics

Comparative Map Data
Thap4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955542195,088 - 217,831 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955542192,888 - 217,985 (+)NCBIChiLan1.0ChiLan1.0
THAP4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2241,584,405 - 241,637,158 (-)EnsemblGRCh38hg38GRCh38
GRCh382241,584,405 - 241,637,543 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh372242,523,820 - 242,576,753 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362242,172,493 - 242,225,328 (-)NCBINCBI36hg18NCBI36
Celera2236,191,554 - 236,248,451 (-)NCBI
Cytogenetic Map2q37.3NCBI
HuRef2234,277,652 - 234,329,989 (-)NCBIHuRef
CHM1_12242,529,419 - 242,582,861 (-)NCBICHM1_1
Thap4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39193,633,113 - 93,682,560 (-)NCBIGRCm39mm39
GRCm38193,705,391 - 93,754,838 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl193,701,935 - 93,754,864 (-)EnsemblGRCm38mm10GRCm38
MGSCv37195,601,968 - 95,651,415 (-)NCBIGRCm37mm9NCBIm37
MGSCv36195,535,797 - 95,585,244 (-)NCBImm8
MGSCv36194,158,268 - 94,207,849 (-)NCBImm8
Celera196,650,530 - 96,699,008 (-)NCBICelera
Cytogenetic Map1DNCBI
Thap4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.09100,848,597 - 100,888,107 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl9100,848,598 - 100,888,107 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.09100,501,661 - 100,541,256 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4992,989,072 - 93,031,408 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1993,193,841 - 93,236,177 (-)NCBI
Celera991,777,055 - 91,816,491 (-)NCBICelera
Cytogenetic Map9q36NCBI
THAP4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12B247,650,249 - 247,684,576 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B247,650,249 - 247,701,219 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02B128,858,512 - 128,913,474 (-)NCBIMhudiblu_PPA_v0panPan3
THAP4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2551,456,344 - 51,494,367 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12551,456,349 - 51,480,753 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
LOC101973969
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_004936745324,988 - 338,257 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
THAP4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15140,185,680 - 140,223,477 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115140,190,198 - 140,223,454 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215154,825,625 - 154,838,103 (-)NCBISscrofa10.2Sscrofa10.2susScr3
THAP4
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1 Ensembl10127,643,102 - 127,689,377 (-)Ensembl
ChlSab1.110127,643,567 - 127,689,582 (-)NCBI
Thap4
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248475,579,521 - 5,605,447 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000003356   ⟹   ENSCLAP00000003290
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955542195,088 - 217,831 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000003357   ⟹   ENSCLAP00000003291
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955542204,394 - 217,831 (+)Ensembl
RefSeq Acc Id: XM_013508087   ⟹   XP_013363541
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955542192,888 - 217,985 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013363541 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_013363541   ⟸   XM_013508087
- Sequence:
RefSeq Acc Id: ENSCLAP00000003291   ⟸   ENSCLAT00000003357
RefSeq Acc Id: ENSCLAP00000003290   ⟸   ENSCLAT00000003356


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000002361 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000003290 ENTREZGENE
Ensembl Transcript ENSCLAT00000003356 ENTREZGENE
NCBI Gene Thap4 ENTREZGENE