Apod (apolipoprotein D) - Rat Genome Database

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Gene: Apod (apolipoprotein D) Chinchilla lanigera
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Symbol: Apod
Name: apolipoprotein D
RGD ID: 8706936
Description: ENCODES a protein that exhibits cholesterol binding (ortholog); INVOLVED IN aging (ortholog); brain development (ortholog); glucose metabolic process (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); Brain Injuries (ortholog); gestational diabetes (ortholog); FOUND IN cytoplasm (ortholog); cytosolic ribosome (ortholog); dendrite (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542013,553,058 - 13,573,690 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542013,553,254 - 13,570,357 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References


Genomics

Comparative Map Data
Apod
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542013,553,058 - 13,573,690 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542013,553,254 - 13,570,357 (+)NCBIChiLan1.0ChiLan1.0
APOD
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl3195,568,705 - 195,584,033 (-)EnsemblGRCh38hg38GRCh38
GRCh383195,568,705 - 195,583,940 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh373195,295,576 - 195,310,811 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363196,776,865 - 196,792,278 (-)NCBINCBI36hg18NCBI36
Celera3193,705,274 - 193,720,781 (-)NCBI
Cytogenetic Map3q29NCBI
HuRef3192,666,066 - 192,681,572 (-)NCBIHuRef
CHM1_13195,258,489 - 195,273,995 (-)NCBICHM1_1
Apod
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391631,115,010 - 31,133,626 (-)NCBIGRCm39mm39
GRCm39 Ensembl1631,115,010 - 31,133,626 (-)Ensembl
GRCm381631,296,192 - 31,314,808 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1631,296,192 - 31,314,808 (-)EnsemblGRCm38mm10GRCm38
MGSCv371631,296,278 - 31,314,682 (-)NCBIGRCm37mm9NCBIm37
MGSCv361631,215,939 - 31,234,343 (-)NCBImm8
Celera1631,811,354 - 31,812,738 (-)NCBICelera
Cytogenetic Map16B2NCBI
cM Map1621.41NCBI
Apod
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21169,431,261 - 69,452,306 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1169,431,260 - 69,452,305 (+)Ensembl
Rnor_6.01172,705,204 - 72,726,263 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1172,705,129 - 72,726,301 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01175,781,496 - 75,804,020 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1168,851,395 - 68,872,467 (+)NCBICelera
Cytogenetic Map11q22NCBI
APOD
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.13203,152,476 - 203,167,888 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3203,152,476 - 203,168,060 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v03192,852,887 - 192,868,233 (-)NCBIMhudiblu_PPA_v0panPan3
APOD
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13330,490,149 - 30,504,804 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3330,488,135 - 30,509,289 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3330,513,383 - 30,531,252 (+)NCBI
ROS_Cfam_1.03330,739,971 - 30,756,943 (+)NCBI
UMICH_Zoey_3.13330,534,404 - 30,551,475 (+)NCBI
UNSW_CanFamBas_1.03330,570,143 - 30,588,341 (+)NCBI
UU_Cfam_GSD_1.03331,191,636 - 31,209,901 (+)NCBI
Apod
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602143,660,676 - 143,676,991 (+)NCBI
SpeTri2.0NW_004936833260,798 - 277,060 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
APOD
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13132,514,949 - 132,562,599 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113132,514,546 - 132,562,594 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213142,076,180 - 142,096,088 (+)NCBISscrofa10.2Sscrofa10.2susScr3
APOD
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11589,612,210 - 89,624,038 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1589,612,040 - 89,624,012 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604163,376,402 - 63,388,926 (-)NCBIVero_WHO_p1.0
Apod
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473062,535,005 - 62,552,405 (+)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000016872   ⟹   ENSCLAP00000016708
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495542013,553,058 - 13,573,690 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000016873   ⟹   ENSCLAP00000016709
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495542013,553,058 - 13,573,690 (+)Ensembl
RefSeq Acc Id: XM_005383177   ⟹   XP_005383234
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542013,553,254 - 13,570,357 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013513581   ⟹   XP_013369035
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542013,553,277 - 13,570,357 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005383234 (Get FASTA)   NCBI Sequence Viewer  
  XP_013369035 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005383234   ⟸   XM_005383177
- Sequence:
RefSeq Acc Id: XP_013369035   ⟸   XM_013513581
- Sequence:
RefSeq Acc Id: ENSCLAP00000016709   ⟸   ENSCLAT00000016873
RefSeq Acc Id: ENSCLAP00000016708   ⟸   ENSCLAT00000016872


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000011471 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000016708 ENTREZGENE
  ENSCLAP00000016709 ENTREZGENE
Ensembl Transcript ENSCLAT00000016872 ENTREZGENE
  ENSCLAT00000016873 ENTREZGENE
NCBI Gene Apod ENTREZGENE