Tsc22d2 (TSC22 domain family member 2) - Rat Genome Database

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Gene: Tsc22d2 (TSC22 domain family member 2) Chinchilla lanigera
Analyze
Symbol: Tsc22d2
Name: TSC22 domain family member 2
RGD ID: 8706237
Description: INVOLVED IN negative regulation of cell cycle (ortholog); response to osmotic stress (ortholog); ASSOCIATED WITH genetic disease (ortholog); glycogen storage disease XV (ortholog); keratoconus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: TSC22 domain family protein 2; TSC22 domain family, member 2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554481,639,463 - 1,678,279 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Tsc22d2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554481,639,463 - 1,678,279 (+)NCBIChiLan1.0ChiLan1.0
TSC22D2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383150,408,298 - 150,466,422 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3150,408,298 - 150,466,422 (+)EnsemblGRCh38hg38GRCh38
GRCh373150,126,085 - 150,184,209 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363151,609,478 - 151,660,321 (+)NCBINCBI36Build 36hg18NCBI36
Celera3148,539,824 - 148,590,663 (+)NCBICelera
Cytogenetic Map3q25.1NCBI
HuRef3147,500,522 - 147,551,293 (+)NCBIHuRef
CHM1_13150,089,862 - 150,140,705 (+)NCBICHM1_1
T2T-CHM13v2.03153,159,594 - 153,217,686 (+)NCBIT2T-CHM13v2.0
Tsc22d2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39358,322,123 - 58,374,208 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl358,322,136 - 58,374,204 (+)EnsemblGRCm39 Ensembl
GRCm38358,414,702 - 58,466,787 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl358,414,715 - 58,466,783 (+)EnsemblGRCm38mm10GRCm38
MGSCv37358,219,611 - 58,270,709 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36358,503,618 - 58,554,716 (+)NCBIMGSCv36mm8
Celera358,108,756 - 58,159,832 (+)NCBICelera
Cytogenetic Map3DNCBI
cM Map328.51NCBI
Tsc22d2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82144,796,760 - 144,847,930 (+)NCBIGRCr8
mRatBN7.22142,646,778 - 142,697,977 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2142,644,744 - 142,693,606 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2149,286,576 - 149,332,836 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02147,392,597 - 147,438,876 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02142,024,997 - 142,071,278 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02148,607,148 - 148,659,632 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2148,607,748 - 148,655,261 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02168,024,657 - 168,077,159 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42147,754,030 - 147,799,940 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera2137,076,548 - 137,123,076 (+)NCBICelera
Cytogenetic Map2q26NCBI
TSC22D2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22148,292,168 - 148,349,039 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13148,298,654 - 148,360,073 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03147,426,058 - 147,484,285 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13155,000,654 - 155,051,795 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3155,001,006 - 155,050,323 (+)Ensemblpanpan1.1panPan2
TSC22D2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12345,086,583 - 45,136,094 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2345,087,628 - 45,133,903 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2344,952,592 - 45,000,409 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02345,715,000 - 45,762,894 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2345,715,169 - 45,764,337 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12345,304,490 - 45,352,300 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02345,356,892 - 45,404,722 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02345,607,951 - 45,655,781 (+)NCBIUU_Cfam_GSD_1.0
Tsc22d2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560290,871,162 - 90,922,455 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936758845,528 - 892,059 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936758845,359 - 898,937 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TSC22D2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1390,641,175 - 90,691,568 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11390,640,490 - 90,697,671 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21398,710,840 - 98,761,868 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TSC22D2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11540,232,247 - 40,284,936 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1540,233,732 - 40,283,899 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604113,053,315 - 13,105,931 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tsc22d2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473027,821,862 - 27,863,344 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473027,821,638 - 27,869,805 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: XM_013518634   ⟹   XP_013374088
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554481,639,463 - 1,678,279 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013374088 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_013374088   ⟸   XM_013518634
- Sequence:


Additional Information

Database Acc Id Source(s)
NCBI Gene Tsc22d2 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Tsc22d2  TSC22 domain family member 2    TSC22 domain family, member 2  Symbol and/or name change 5135510 APPROVED