Rab10 (RAB10, member RAS oncogene family) - Rat Genome Database

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Gene: Rab10 (RAB10, member RAS oncogene family) Chinchilla lanigera
Analyze
Symbol: Rab10
Name: RAB10, member RAS oncogene family
RGD ID: 8705067
Description: ENCODES a protein that exhibits GDP binding (ortholog); GDP-dissociation inhibitor binding (ortholog); GTP binding (ortholog); INVOLVED IN antigen processing and presentation (ortholog); axonogenesis (ortholog); cellular response to antibiotic (ortholog); PARTICIPATES IN insulin responsive facilitative sugar transporter mediated glucose transport pathway; Rab family mediated signaling pathway; ASSOCIATED WITH genetic disease (ortholog); Liver Reperfusion Injury (ortholog); Tatton-Brown-Rahman syndrome (ortholog); FOUND IN cilium (ortholog); endoplasmic reticulum membrane (ortholog); endoplasmic reticulum tubular network (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ras-related protein Rab-10
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554698,057,235 - 8,138,983 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554698,057,235 - 8,138,983 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Rab10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554698,057,235 - 8,138,983 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554698,057,235 - 8,138,983 (+)NCBIChiLan1.0ChiLan1.0
RAB10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38226,033,285 - 26,137,454 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl226,034,084 - 26,137,454 (+)EnsemblGRCh38hg38GRCh38
GRCh37226,256,953 - 26,360,323 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36226,110,478 - 26,213,782 (+)NCBINCBI36Build 36hg18NCBI36
Build 34226,168,624 - 26,271,929NCBI
Celera226,097,002 - 26,200,567 (+)NCBICelera
Cytogenetic Map2p23.3NCBI
HuRef225,993,019 - 26,096,921 (+)NCBIHuRef
CHM1_1226,186,807 - 26,290,405 (+)NCBICHM1_1
T2T-CHM13v2.0226,069,400 - 26,172,749 (+)NCBIT2T-CHM13v2.0
Rab10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39123,297,428 - 3,359,969 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl123,297,428 - 3,359,969 (-)EnsemblGRCm39 Ensembl
GRCm38123,247,428 - 3,309,969 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl123,247,428 - 3,309,969 (-)EnsemblGRCm38mm10GRCm38
MGSCv37123,247,428 - 3,309,969 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36123,247,726 - 3,309,939 (-)NCBIMGSCv36mm8
Celera123,174,851 - 3,237,418 (-)NCBICelera
Cytogenetic Map12A1.1NCBI
cM Map121.71NCBI
Rab10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8631,974,858 - 32,039,554 (-)NCBIGRCr8
mRatBN7.2626,267,081 - 26,319,739 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl626,266,859 - 26,320,193 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx626,559,705 - 26,612,364 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0626,875,588 - 26,928,242 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0626,353,848 - 26,406,629 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0627,668,387 - 27,721,120 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl627,668,403 - 27,721,120 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0637,479,058 - 37,531,622 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.1626,260,312 - 26,297,639NCBI
Celera625,743,962 - 25,796,212 (-)NCBICelera
Cytogenetic Map6q14NCBI
RAB10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v212100,381,221 - 100,485,143 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A100,385,189 - 100,488,306 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A26,034,046 - 26,132,658 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A26,125,984 - 26,228,505 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A26,125,985 - 26,228,505 (+)Ensemblpanpan1.1panPan2
RAB10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11720,181,363 - 20,264,927 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1720,181,363 - 20,264,927 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1720,077,187 - 20,160,857 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01720,503,635 - 20,587,796 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1720,503,607 - 20,589,813 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11720,190,180 - 20,274,283 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01720,200,321 - 20,284,230 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01720,247,131 - 20,331,947 (+)NCBIUU_Cfam_GSD_1.0
Rab10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629264,488,453 - 64,575,695 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364936,263,863 - 6,351,327 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364936,263,870 - 6,351,327 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RAB10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3112,829,137 - 112,924,269 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13112,842,190 - 112,924,188 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23119,827,428 - 119,909,414 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RAB10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11481,508,800 - 81,618,172 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1481,507,031 - 81,617,983 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604530,540,276 - 30,649,087 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rab10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247388,212,355 - 8,294,423 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247388,212,401 - 8,294,307 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000016118   ⟹   ENSCLAP00000015954
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554698,057,235 - 8,138,983 (+)Ensembl
RefSeq Acc Id: XM_005400418   ⟹   XP_005400475
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554698,057,235 - 8,138,983 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005400475 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000015954
  ENSCLAP00000015954.1
Reference Protein Sequences
RefSeq Acc Id: XP_005400475   ⟸   XM_005400418
- UniProtKB: A0A8C2VK51 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000015954   ⟸   ENSCLAT00000016118


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000010979 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000016118 ENTREZGENE
  ENSCLAT00000016118.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro P-loop_NTPase UniProtKB/TrEMBL
  Small_GTP-bd_dom UniProtKB/TrEMBL
  Small_GTPase UniProtKB/TrEMBL
NCBI Gene Rab10 ENTREZGENE
PANTHER LD44762P UniProtKB/TrEMBL
  RAS-RELATED PROTEIN RAB-10 UniProtKB/TrEMBL
Pfam Ras UniProtKB/TrEMBL
PRINTS RASTRNSFRMNG UniProtKB/TrEMBL
PROSITE RAB UniProtKB/TrEMBL
  RAS UniProtKB/TrEMBL
  RHO UniProtKB/TrEMBL
SMART RAB UniProtKB/TrEMBL
  RAN UniProtKB/TrEMBL
  RAS UniProtKB/TrEMBL
  RHO UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A8C2VK51 ENTREZGENE, UniProtKB/TrEMBL