Mtmr2 (myotubularin related protein 2) - Rat Genome Database

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Gene: Mtmr2 (myotubularin related protein 2) Chinchilla lanigera
Analyze
Symbol: Mtmr2
Name: myotubularin related protein 2
RGD ID: 8703441
Description: ENCODES a protein that exhibits identical protein binding (ortholog); phosphatidylinositol phosphate phosphatase activity (ortholog); phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity (ortholog); INVOLVED IN dendritic spine maintenance (ortholog); dephosphorylation (ortholog); inositol phosphate dephosphorylation (ortholog); ASSOCIATED WITH ataxia telangiectasia (ortholog); Charcot-Marie-Tooth disease (ortholog); Charcot-Marie-Tooth disease type 4 (ortholog); FOUND IN axon (ortholog); cytoplasm (ortholog); cytosol (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: myotubularin-related protein 2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955412693,743 - 750,154 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955412693,743 - 764,377 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISS annotations to Chinchilla, Squirrel, Bonobo and/or Dog genes from Human gene annotations
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline

Genomics

Comparative Map Data
Mtmr2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955412693,743 - 750,154 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955412693,743 - 764,377 (-)NCBIChiLan1.0ChiLan1.0
MTMR2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381195,832,880 - 95,924,107 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1195,821,766 - 95,925,315 (-)EnsemblGRCh38hg38GRCh38
GRCh371195,566,044 - 95,657,271 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361195,205,694 - 95,296,920 (-)NCBINCBI36hg18NCBI36
Build 341195,205,693 - 95,296,920NCBI
Celera1192,864,432 - 92,955,746 (-)NCBI
Cytogenetic Map11q21NCBI
HuRef1191,631,843 - 91,723,157 (-)NCBIHuRef
CHM1_11195,449,060 - 95,540,399 (-)NCBICHM1_1
T2T-CHM13v2.01195,840,305 - 95,931,520 (-)NCBI
Mtmr2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39913,660,397 - 13,720,192 (+)NCBIGRCm39mm39
GRCm39 Ensembl913,659,706 - 13,717,777 (+)Ensembl
GRCm38913,747,260 - 13,808,896 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl913,748,410 - 13,806,481 (+)EnsemblGRCm38mm10GRCm38
MGSCv37913,553,625 - 13,610,925 (+)NCBIGRCm37mm9NCBIm37
MGSCv36913,498,807 - 13,556,194 (+)NCBImm8
Celera911,027,704 - 11,084,917 (+)NCBICelera
Cytogenetic Map9A1NCBI
Mtmr2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2810,617,993 - 10,670,724 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl810,617,993 - 10,668,172 (+)Ensembl
Rnor_6.0812,283,471 - 12,334,014 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl812,284,528 - 12,333,316 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0812,233,710 - 12,284,290 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4810,556,644 - 10,606,844 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1810,557,636 - 10,605,951 (+)NCBI
Celera812,118,312 - 12,168,683 (+)NCBICelera
Cytogenetic Map8q12NCBI
MTMR2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11194,367,038 - 94,457,138 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1194,367,038 - 94,457,138 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01190,839,577 - 90,929,731 (-)NCBIMhudiblu_PPA_v0panPan3
MTMR2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1215,194,772 - 5,316,441 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl215,194,604 - 5,315,375 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha215,205,909 - 5,327,596 (+)NCBI
ROS_Cfam_1.0215,366,974 - 5,491,223 (+)NCBI
ROS_Cfam_1.0 Ensembl215,366,812 - 5,491,187 (+)Ensembl
UMICH_Zoey_3.1215,164,226 - 5,285,897 (+)NCBI
UNSW_CanFamBas_1.0215,225,833 - 5,347,545 (+)NCBI
UU_Cfam_GSD_1.0215,273,521 - 5,395,231 (+)NCBI
Mtmr2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494780,672,667 - 80,755,065 (-)NCBI
SpeTri2.0NW_0049367001,790,592 - 1,873,019 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MTMR2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl927,854,491 - 27,974,423 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1927,864,335 - 27,974,448 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2931,847,124 - 31,938,450 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MTMR2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1187,090,401 - 87,181,057 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl187,087,191 - 87,180,497 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604338,639,598 - 38,727,631 (+)NCBIVero_WHO_p1.0
Mtmr2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473540,673,156 - 40,770,693 (-)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000017281   ⟹   ENSCLAP00000017112
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955412693,743 - 750,154 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000017282   ⟹   ENSCLAP00000017113
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955412694,136 - 749,956 (-)Ensembl
RefSeq Acc Id: XM_005377950   ⟹   XP_005378007
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955412693,743 - 764,377 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005378007 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005378007   ⟸   XM_005377950
- Sequence:
RefSeq Acc Id: ENSCLAP00000017112   ⟸   ENSCLAT00000017281
RefSeq Acc Id: ENSCLAP00000017113   ⟸   ENSCLAT00000017282

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000011747 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCLAP00000017112 ENTREZGENE
  ENSCLAP00000017112.1 UniProtKB/TrEMBL
  ENSCLAP00000017113.1 UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000017281 ENTREZGENE
  ENSCLAT00000017281.1 UniProtKB/TrEMBL
  ENSCLAT00000017282.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.29.30 UniProtKB/TrEMBL
InterPro GRAM UniProtKB/TrEMBL
  Myotubularin-like_Pase_dom UniProtKB/TrEMBL
  Myotubularin_fam UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/TrEMBL
  Prot-tyrosine_phosphatase-like UniProtKB/TrEMBL
  Tyr_Pase_AS UniProtKB/TrEMBL
  Tyr_Pase_cat UniProtKB/TrEMBL
  Tyr_Pase_dom UniProtKB/TrEMBL
NCBI Gene Mtmr2 ENTREZGENE
PANTHER PTHR10807 UniProtKB/TrEMBL
Pfam GRAM UniProtKB/TrEMBL
  Myotub-related UniProtKB/TrEMBL
PROSITE PPASE_MYOTUBULARIN UniProtKB/TrEMBL
  TYR_PHOSPHATASE_1 UniProtKB/TrEMBL
  TYR_PHOSPHATASE_2 UniProtKB/TrEMBL
SMART GRAM UniProtKB/TrEMBL
  PTPc_motif UniProtKB/TrEMBL
Superfamily-SCOP SSF52799 UniProtKB/TrEMBL
UniProt A0A8C2VKU0_CHILA UniProtKB/TrEMBL
  A0A8C2VR76_CHILA UniProtKB/TrEMBL