Acad10 (acyl-CoA dehydrogenase family member 10) - Rat Genome Database

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Gene: Acad10 (acyl-CoA dehydrogenase family member 10) Chinchilla lanigera
Analyze
Symbol: Acad10
Name: acyl-CoA dehydrogenase family member 10
RGD ID: 8703413
Description: ASSOCIATED WITH genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: acyl-CoA dehydrogenase family, member 10
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554828,288,032 - 8,327,161 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554828,282,530 - 8,327,511 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Acad10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554828,288,032 - 8,327,161 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554828,282,530 - 8,327,511 (+)NCBIChiLan1.0ChiLan1.0
ACAD10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812111,686,053 - 111,757,099 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12111,686,053 - 111,757,107 (+)EnsemblGRCh38hg38GRCh38
GRCh3712112,123,857 - 112,194,903 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612110,608,285 - 110,679,284 (+)NCBINCBI36Build 36hg18NCBI36
Build 3412110,586,621 - 110,657,621NCBI
Celera12111,749,322 - 111,820,374 (+)NCBICelera
Cytogenetic Map12q24.12NCBI
HuRef12109,137,356 - 109,208,514 (+)NCBIHuRef
CHM1_112112,091,820 - 112,162,850 (+)NCBICHM1_1
T2T-CHM13v2.012111,662,974 - 111,734,020 (+)NCBIT2T-CHM13v2.0
Acad10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395121,759,089 - 121,798,642 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5121,759,089 - 121,798,577 (-)EnsemblGRCm39 Ensembl
GRCm385121,621,026 - 121,660,603 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5121,621,026 - 121,660,514 (-)EnsemblGRCm38mm10GRCm38
MGSCv375122,071,038 - 122,110,519 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365121,881,644 - 121,921,096 (-)NCBIMGSCv36mm8
Celera5118,710,973 - 118,750,393 (-)NCBICelera
Cytogenetic Map5FNCBI
cM Map561.88NCBI
Acad10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81240,561,900 - 40,604,378 (+)NCBIGRCr8
mRatBN7.21234,901,211 - 34,943,973 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1234,901,219 - 34,982,521 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1236,074,099 - 36,116,560 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01236,685,310 - 36,727,771 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01235,737,761 - 35,780,222 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01240,417,918 - 40,460,562 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1240,417,944 - 40,460,561 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01242,285,817 - 42,328,189 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41236,070,275 - 36,075,844 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11235,927,378 - 35,939,233 (+)NCBI
Celera1236,565,774 - 36,608,251 (+)NCBICelera
Cytogenetic Map12q16NCBI
ACAD10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210119,757,221 - 119,827,555 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112119,753,612 - 119,824,042 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012109,263,232 - 109,333,604 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112112,672,114 - 112,724,629 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12112,667,010 - 112,724,629 (+)Ensemblpanpan1.1panPan2
ACAD10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1269,251,041 - 9,297,746 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha269,413,588 - 9,455,745 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0269,510,500 - 9,557,294 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl269,510,587 - 9,557,371 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1269,466,234 - 9,512,977 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0269,528,970 - 9,575,705 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0269,482,035 - 9,528,993 (+)NCBIUU_Cfam_GSD_1.0
Acad10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118155,134,695 - 155,185,291 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365584,294,212 - 4,346,409 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365584,294,218 - 4,344,719 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ACAD10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1432,841,911 - 32,890,981 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11432,841,863 - 32,890,983 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21434,963,067 - 34,981,810 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ACAD10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111106,938,725 - 107,008,272 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11106,938,742 - 107,007,650 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037138,087,085 - 138,157,025 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Acad10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474720,464,499 - 20,520,492 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474720,464,100 - 20,526,131 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSCLAT00000018685   ⟹   ENSCLAP00000018504
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554828,288,032 - 8,327,161 (+)Ensembl
RefSeq Acc Id: XM_005403170   ⟹   XP_005403227
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554828,282,531 - 8,327,511 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013503680   ⟹   XP_013359134
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554828,282,531 - 8,327,511 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013503681   ⟹   XP_013359135
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554828,282,531 - 8,327,511 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013503682   ⟹   XP_013359136
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554828,282,531 - 8,327,511 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013503683   ⟹   XP_013359137
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554828,282,530 - 8,327,511 (+)NCBI
Sequence:
RefSeq Acc Id: XP_005403227   ⟸   XM_005403170
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VRE8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013359137   ⟸   XM_013503683
- Peptide Label: isoform X2
- UniProtKB: A0A8C2VRE8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013359134   ⟸   XM_013503680
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VRE8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013359135   ⟸   XM_013503681
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VRE8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013359136   ⟸   XM_013503682
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VRE8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000018504   ⟸   ENSCLAT00000018685

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000012691 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000018685 ENTREZGENE
  ENSCLAT00000018685.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.540.10 UniProtKB/TrEMBL
  2.40.110.10 UniProtKB/TrEMBL
  3.40.50.1000 UniProtKB/TrEMBL
  3.90.1200.10 UniProtKB/TrEMBL
  Butyryl-CoA Dehydrogenase, subunit A, domain 3 UniProtKB/TrEMBL
InterPro ACAD10_11_N UniProtKB/TrEMBL
  Acyl-CoA_Oxase/DH_cen-dom UniProtKB/TrEMBL
  Acyl-CoA_Oxase/DH_mid-dom_sf UniProtKB/TrEMBL
  AcylCo_DH-like_C UniProtKB/TrEMBL
  AcylCo_DH/oxidase_C UniProtKB/TrEMBL
  AcylCoA_DH/ox_N UniProtKB/TrEMBL
  AcylCoA_DH/ox_N_sf UniProtKB/TrEMBL
  AcylCoA_DH/oxidase_NM_dom UniProtKB/TrEMBL
  Aminoglycoside_PTrfase UniProtKB/TrEMBL
  HAD-like_sf UniProtKB/TrEMBL
  HAD-SF_hydro_IA UniProtKB/TrEMBL
  HAD-SF_ppase_IA/epoxid_hydro_N UniProtKB/TrEMBL
  HAD_sf UniProtKB/TrEMBL
  Kinase-like_dom_sf UniProtKB/TrEMBL
  PGP-like_dom2 UniProtKB/TrEMBL
NCBI Gene Acad10 ENTREZGENE
PANTHER HYDROLASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G12880)-RELATED UniProtKB/TrEMBL
  HYDROLASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G12880)-RELATED UniProtKB/TrEMBL
Pfam Acyl-CoA_dh_1 UniProtKB/TrEMBL
  Acyl-CoA_dh_M UniProtKB/TrEMBL
  Acyl-CoA_dh_N UniProtKB/TrEMBL
  APH UniProtKB/TrEMBL
  Hydrolase UniProtKB/TrEMBL
PRINTS HADHALOGNASE UniProtKB/TrEMBL
Superfamily-SCOP SSF47203 UniProtKB/TrEMBL
  SSF56112 UniProtKB/TrEMBL
  SSF56645 UniProtKB/TrEMBL
  SSF56784 UniProtKB/TrEMBL
UniProt A0A8C2VRE8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Acad10  acyl-CoA dehydrogenase family member 10    acyl-CoA dehydrogenase family, member 10  Symbol and/or name change 5135510 APPROVED