Znf750 (zinc finger protein 750) - Rat Genome Database

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Gene: Znf750 (zinc finger protein 750) Chinchilla lanigera
Analyze
Symbol: Znf750
Name: zinc finger protein 750
RGD ID: 8702856
Description: ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); promoter-specific chromatin binding (ortholog); INVOLVED IN epidermis development (ortholog); establishment of skin barrier (ortholog); membrane biogenesis (ortholog); ASSOCIATED WITH early onset progressive encephalopathy with brain atrophy and thin corpus callosum (ortholog); genetic disease (ortholog); Seborrhea-Like Dermatitis with Psoriasiform Elements (ortholog); FOUND IN nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955506352,552 - 363,003 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955506352,616 - 360,802 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Znf750
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955506352,552 - 363,003 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955506352,616 - 360,802 (+)NCBIChiLan1.0ChiLan1.0
ZNF750
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381782,829,434 - 82,840,022 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1782,829,434 - 82,840,022 (-)EnsemblGRCh38hg38GRCh38
GRCh371780,787,310 - 80,797,898 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361778,380,599 - 78,391,220 (-)NCBINCBI36Build 36hg18NCBI36
Celera1777,382,410 - 77,393,031 (-)NCBICelera
Cytogenetic Map17q25.3NCBI
HuRef1776,188,827 - 76,199,624 (-)NCBIHuRef
CHM1_11780,873,594 - 80,884,216 (-)NCBICHM1_1
T2T-CHM13v2.01783,704,197 - 83,714,778 (-)NCBIT2T-CHM13v2.0
Zfp750
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911121,401,802 - 121,410,168 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11121,401,804 - 121,410,159 (-)EnsemblGRCm39 Ensembl
GRCm3811121,510,976 - 121,519,342 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11121,510,978 - 121,519,333 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711121,372,290 - 121,380,656 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611121,327,068 - 121,335,392 (-)NCBIMGSCv36mm8
Celera11133,246,969 - 133,255,334 (-)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1185.49NCBI
Znf750
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810107,270,926 - 107,279,904 (-)NCBIGRCr8
mRatBN7.210106,772,162 - 106,781,186 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10106,772,669 - 106,781,200 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.010110,698,581 - 110,701,222 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10110,698,891 - 110,701,137 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010110,283,100 - 110,286,758 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera10105,308,542 - 105,311,184 (-)NCBICelera
Cytogenetic Map10q32.3NCBI
ZNF750
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21999,372,233 - 99,389,529 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan117104,275,815 - 104,282,018 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01777,246,953 - 77,260,598 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11783,043,886 - 83,054,446 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1783,043,886 - 83,054,446 (-)Ensemblpanpan1.1panPan2
ZNF750
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha9276,880 - 289,093 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.09268,566 - 280,803 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl9277,747 - 280,045 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.19262,771 - 274,975 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.09424,031 - 436,203 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.09499,233 - 511,457 (+)NCBIUU_Cfam_GSD_1.0
Znf750
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602262,603 - 270,355 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936923299,719 - 307,488 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936923299,725 - 302,741 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF750
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.112398,498 - 407,812 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.212329,870 - 339,270 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZNF750
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11674,720,080 - 74,731,951 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1674,720,763 - 74,723,075 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607746,375,040 - 46,386,964 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Znf750
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480111,520,636 - 11,522,890 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462480111,519,383 - 11,528,264 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000006376   ⟹   ENSCLAP00000006273
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_004955506352,552 - 363,003 (+)Ensembl
RefSeq Acc Id: XM_005407180   ⟹   XP_005407237
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_004955506352,616 - 360,802 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005407237 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000006273
  ENSCLAP00000006273.1
Reference Protein Sequences
RefSeq Acc Id: XP_005407237   ⟸   XM_005407180
- UniProtKB: A0A8C2UW58 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000006273   ⟸   ENSCLAT00000006376
Protein Domains
Zinc finger protein 750-like zinc finger


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000004435 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000006376 ENTREZGENE
  ENSCLAT00000006376.1 UniProtKB/TrEMBL
InterPro ZNF750 UniProtKB/TrEMBL
  ZNF750_Znf UniProtKB/TrEMBL
NCBI Gene Znf750 ENTREZGENE
PANTHER PTHR14678 UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 750 UniProtKB/TrEMBL
Pfam zf-C2H2_7 UniProtKB/TrEMBL
UniProt A0A8C2UW58 ENTREZGENE, UniProtKB/TrEMBL