Ncam2 (neural cell adhesion molecule 2) - Rat Genome Database

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Gene: Ncam2 (neural cell adhesion molecule 2) Chinchilla lanigera
Analyze
Symbol: Ncam2
Name: neural cell adhesion molecule 2
RGD ID: 8702432
Description: ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN axonal fasciculation (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); amenorrhea (ortholog); genetic disease (ortholog); FOUND IN axon (ortholog); nuclear body (ortholog); plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540721,730,434 - 22,215,377 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540721,730,331 - 22,220,664 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Ncam2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540721,730,434 - 22,215,377 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540721,730,331 - 22,220,664 (+)NCBIChiLan1.0ChiLan1.0
NCAM2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382120,998,409 - 21,543,329 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2120,998,409 - 21,543,329 (+)EnsemblGRCh38hg38GRCh38
GRCh372122,370,727 - 22,915,650 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362121,292,504 - 21,833,085 (+)NCBINCBI36Build 36hg18NCBI36
Build 342121,292,503 - 21,833,085NCBI
Celera217,541,720 - 8,085,871 (+)NCBICelera
Cytogenetic Map21q21.1NCBI
HuRef217,759,027 - 8,304,119 (+)NCBIHuRef
CHM1_12121,932,803 - 22,475,089 (+)NCBICHM1_1
T2T-CHM13v2.02119,360,795 - 19,909,385 (+)NCBIT2T-CHM13v2.0
Ncam2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391680,997,501 - 81,425,549 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1680,997,585 - 81,423,716 (+)EnsemblGRCm39 Ensembl
GRCm381681,200,697 - 81,624,290 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1681,200,697 - 81,626,828 (+)EnsemblGRCm38mm10GRCm38
MGSCv371681,200,942 - 81,624,535 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361681,083,363 - 81,480,397 (+)NCBIMGSCv36mm8
Celera1681,402,043 - 81,825,338 (+)NCBICelera
Cytogenetic Map16C3.3NCBI
cM Map1645.89NCBI
Ncam2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81133,591,748 - 34,078,788 (+)NCBIGRCr8
mRatBN7.21120,104,974 - 20,592,168 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1120,104,925 - 20,591,984 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1128,761,953 - 29,257,661 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01121,463,433 - 21,958,042 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01120,651,012 - 21,146,747 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01119,669,922 - 20,705,063 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1120,471,764 - 20,705,063 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01123,856,942 - 24,353,041 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41120,409,948 - 20,911,422 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11120,423,191 - 20,911,422 (+)NCBI
Celera1119,468,505 - 20,502,763 (+)NCBICelera
Cytogenetic Map11q11NCBI
NCAM2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22217,454,640 - 17,999,508 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12112,291,281 - 12,838,832 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0217,703,278 - 8,250,763 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12121,061,757 - 21,602,254 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2121,344,602 - 21,601,438 (+)Ensemblpanpan1.1panPan2
NCAM2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13116,912,768 - 17,434,854 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3116,912,908 - 17,429,510 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3116,950,212 - 17,475,661 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03116,954,178 - 17,471,017 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3116,954,372 - 17,470,285 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13116,959,755 - 17,482,428 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03116,972,239 - 17,488,890 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03117,374,303 - 17,889,819 (+)NCBIUU_Cfam_GSD_1.0
Ncam2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440497118,126,187 - 18,346,662 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049368221,036,205 - 1,189,028 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049368221,033,660 - 1,189,131 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NCAM2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13185,176,461 - 185,679,885 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113185,176,282 - 185,679,891 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213195,314,227 - 195,518,758 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NCAM2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1271,075,834 - 71,622,707 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl271,076,654 - 71,442,031 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605082,397,301 - 82,957,086 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ncam2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247459,327,345 - 9,822,852 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247459,327,125 - 9,826,922 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005375584 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005375585 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AGCD01007371 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01007372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01007373 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01007374 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01007375 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01007376 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01007377 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01007378 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01007379 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01007380 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01007381 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01007382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGCD01007383 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GBBH01154784 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCLAT00000014110   ⟹   ENSCLAP00000013954
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540721,730,434 - 22,215,377 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000014111   ⟹   ENSCLAP00000013955
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540721,963,178 - 22,215,377 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000014112   ⟹   ENSCLAP00000013956
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540721,963,178 - 22,182,006 (+)Ensembl
RefSeq Acc Id: XM_005375584   ⟹   XP_005375641
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540721,730,331 - 22,220,664 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005375585   ⟹   XP_005375642
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540721,730,331 - 22,182,678 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005375641 (Get FASTA)   NCBI Sequence Viewer  
  XP_005375642 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000013954
  ENSCLAP00000013954.1
  ENSCLAP00000013955.1
  ENSCLAP00000013956
  ENSCLAP00000013956.1
Reference Protein Sequences
RefSeq Acc Id: XP_005375641   ⟸   XM_005375584
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VDH5 (UniProtKB/TrEMBL),   A0A8C2VDH3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005375642   ⟸   XM_005375585
- Peptide Label: isoform X2
- UniProtKB: A0A8C2VDE4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000013954   ⟸   ENSCLAT00000014110
RefSeq Acc Id: ENSCLAP00000013955   ⟸   ENSCLAT00000014111
RefSeq Acc Id: ENSCLAP00000013956   ⟸   ENSCLAT00000014112
Protein Domains
Fibronectin type-III   Ig-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000009655 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000014110 ENTREZGENE
  ENSCLAT00000014110.1 UniProtKB/TrEMBL
  ENSCLAT00000014111.1 UniProtKB/TrEMBL
  ENSCLAT00000014112 ENTREZGENE
  ENSCLAT00000014112.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro FN3_dom UniProtKB/TrEMBL
  FN3_sf UniProtKB/TrEMBL
  Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_I-set UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/TrEMBL
  Ig_V-set UniProtKB/TrEMBL
  Neural_cell_adh UniProtKB/TrEMBL
NCBI Gene Ncam2 ENTREZGENE
PANTHER CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN UniProtKB/TrEMBL
  MICROFIBRILLAR-ASSOCIATED PROTEIN 3-LIKE-RELATED UniProtKB/TrEMBL
Pfam fn3 UniProtKB/TrEMBL
  I-set UniProtKB/TrEMBL
  Ig_3 UniProtKB/TrEMBL
PRINTS NCAMFAMILY UniProtKB/TrEMBL
PROSITE FN3 UniProtKB/TrEMBL
  IG_LIKE UniProtKB/TrEMBL
SMART FN3 UniProtKB/TrEMBL
  IGc2 UniProtKB/TrEMBL
  IGv UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
  SSF49265 UniProtKB/TrEMBL
UniProt A0A8C2VDE4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2VDH3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C2VDH5 ENTREZGENE, UniProtKB/TrEMBL