Chchd1 (coiled-coil-helix-coiled-coil-helix domain containing 1) - Rat Genome Database

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Gene: Chchd1 (coiled-coil-helix-coiled-coil-helix domain containing 1) Chinchilla lanigera
Analyze
Symbol: Chchd1
Name: coiled-coil-helix-coiled-coil-helix domain containing 1
RGD ID: 8701722
Description: ASSOCIATED WITH genetic disease (ortholog); FOUND IN cytosol (ortholog); fibrillar center (ortholog); mitochondrion (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: coiled-coil-helix-coiled-coil-helix domain-containing protein 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543718,116,923 - 18,118,670 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543718,117,090 - 18,118,586 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Chchd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543718,116,923 - 18,118,670 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543718,117,090 - 18,118,586 (-)NCBIChiLan1.0ChiLan1.0
CHCHD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381073,782,048 - 73,783,652 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1073,782,047 - 73,783,652 (+)EnsemblGRCh38hg38GRCh38
GRCh371075,541,806 - 75,543,410 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361075,211,834 - 75,213,137 (+)NCBINCBI36Build 36hg18NCBI36
Celera1068,824,977 - 68,826,575 (+)NCBICelera
Cytogenetic Map10q22.2NCBI
HuRef1069,536,882 - 69,538,480 (+)NCBIHuRef
CHM1_11075,823,585 - 75,825,183 (+)NCBICHM1_1
T2T-CHM13v2.01074,653,448 - 74,655,052 (+)NCBIT2T-CHM13v2.0
Chchd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391420,753,095 - 20,754,493 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1420,753,074 - 20,754,493 (+)EnsemblGRCm39 Ensembl
GRCm381420,703,027 - 20,704,425 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1420,703,006 - 20,704,425 (+)EnsemblGRCm38mm10GRCm38
MGSCv371421,522,249 - 21,523,647 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361419,491,621 - 19,492,969 (+)NCBIMGSCv36mm8
Celera1417,085,793 - 17,087,241 (+)NCBICelera
Cytogenetic Map14A3NCBI
cM Map1411.53NCBI
Chchd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8153,641,973 - 3,643,155 (-)NCBIGRCr8
mRatBN7.2153,592,719 - 3,593,901 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl153,592,727 - 3,593,901 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx153,602,910 - 3,604,092 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0154,989,386 - 4,990,568 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0153,601,719 - 3,602,901 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0154,025,455 - 4,026,637 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl154,025,463 - 4,026,637 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0158,126,673 - 8,127,855 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4153,818,169 - 3,819,351 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1153,818,167 - 3,819,345 (-)NCBI
Celera151,000,284 - 1,001,466 (+)NCBICelera
Cytogenetic Map15p16NCBI
CHCHD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2885,932,917 - 85,934,259 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11085,938,245 - 85,939,583 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01070,304,964 - 70,306,299 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11072,977,573 - 72,979,166 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1072,977,573 - 72,979,166 (+)Ensemblpanpan1.1panPan2
CHCHD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1424,217,363 - 24,218,739 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl424,217,433 - 24,218,739 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha424,355,007 - 24,356,330 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0424,497,771 - 24,499,094 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl424,497,788 - 24,499,094 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1424,394,926 - 24,396,247 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0424,595,347 - 24,596,670 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0424,950,398 - 24,951,721 (+)NCBIUU_Cfam_GSD_1.0
Chchd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721356,873,209 - 56,874,799 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365215,365,939 - 5,367,511 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365215,365,934 - 5,367,514 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CHCHD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1476,507,318 - 76,509,241 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11476,507,297 - 76,509,260 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21482,633,955 - 82,635,897 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CHCHD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1957,589,273 - 57,590,597 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl957,589,462 - 57,590,554 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604818,166,402 - 18,167,721 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Chchd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247547,297,531 - 7,299,058 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247547,297,495 - 7,299,058 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000017934   ⟹   ENSCLAP00000017759
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495543718,116,923 - 18,118,670 (-)Ensembl
RefSeq Acc Id: XM_005389962   ⟹   XP_005390019
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543718,117,090 - 18,118,586 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005390019 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000017759
  ENSCLAP00000017759.1
Reference Protein Sequences
RefSeq Acc Id: XP_005390019   ⟸   XM_005389962
- UniProtKB: A0A8C2VPK4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000017759   ⟸   ENSCLAT00000017934
Protein Domains
CHCH


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000012183 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000017934 ENTREZGENE
  ENSCLAT00000017934.1 UniProtKB/TrEMBL
InterPro CHCH UniProtKB/TrEMBL
  CHCHD1 UniProtKB/TrEMBL
  Cys_alpha_HP_mot_SF UniProtKB/TrEMBL
NCBI Gene Chchd1 ENTREZGENE
PANTHER COILED-COIL-HELIX-COILED-COIL-HELIX DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
  PTHR31278 UniProtKB/TrEMBL
Pfam CHCH UniProtKB/TrEMBL
PROSITE CHCH UniProtKB/TrEMBL
Superfamily-SCOP SSF47072 UniProtKB/TrEMBL
UniProt A0A8C2VPK4 ENTREZGENE, UniProtKB/TrEMBL