St7l (suppression of tumorigenicity 7 like) - Rat Genome Database

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Gene: St7l (suppression of tumorigenicity 7 like) Chinchilla lanigera
Analyze
Symbol: St7l
Name: suppression of tumorigenicity 7 like
RGD ID: 8701550
Description: INVOLVED IN negative regulation of cell growth (ortholog); ASSOCIATED WITH genetic disease (ortholog); hereditary spastic paraplegia 47 (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: suppressor of tumorigenicity 7 protein-like
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543515,979,927 - 16,048,036 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543515,938,815 - 16,048,237 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
St7l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543515,979,927 - 16,048,036 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543515,938,815 - 16,048,237 (-)NCBIChiLan1.0ChiLan1.0
ST7L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381112,517,803 - 112,619,684 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1112,523,514 - 112,620,825 (-)EnsemblGRCh38hg38GRCh38
GRCh371113,066,136 - 113,161,763 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361112,867,663 - 112,963,563 (-)NCBINCBI36Build 36hg18NCBI36
Build 341112,778,184 - 112,874,082NCBI
Celera1111,296,667 - 111,392,566 (-)NCBICelera
Cytogenetic Map1p13.2NCBI
HuRef1110,925,985 - 111,020,750 (-)NCBIHuRef
CHM1_11113,180,974 - 113,276,921 (-)NCBICHM1_1
T2T-CHM13v2.01112,530,373 - 112,632,344 (-)NCBIT2T-CHM13v2.0
St7l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393104,771,822 - 104,837,384 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl3104,771,321 - 104,837,380 (+)EnsemblGRCm39 Ensembl
GRCm383104,864,506 - 104,949,328 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3104,864,005 - 104,930,064 (+)EnsemblGRCm38mm10GRCm38
MGSCv373104,667,999 - 104,729,758 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv363104,993,137 - 105,054,896 (+)NCBIMGSCv36mm8
Celera3107,060,717 - 107,122,594 (+)NCBICelera
Cytogenetic Map3F2.2NCBI
cM Map345.88NCBI
St7l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82195,052,939 - 195,122,755 (+)NCBIGRCr8
mRatBN7.22192,364,594 - 192,434,414 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2192,364,594 - 192,487,190 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2199,958,967 - 200,028,511 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02197,831,226 - 197,901,036 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02192,648,170 - 192,717,985 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02207,350,651 - 207,421,082 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2207,350,651 - 207,473,857 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02226,767,139 - 226,835,175 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42200,125,720 - 200,198,472 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12200,088,473 - 200,161,223 (+)NCBI
Celera2184,830,601 - 184,900,348 (+)NCBICelera
Cytogenetic Map2q34NCBI
ST7L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21114,415,544 - 114,511,597 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11113,563,555 - 113,657,999 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01115,177,465 - 115,274,105 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11125,078,332 - 125,173,503 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1125,077,920 - 125,175,627 (+)Ensemblpanpan1.1panPan2
ST7L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11762,948,496 - 63,034,678 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1762,948,517 - 63,087,158 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1762,461,605 - 62,548,049 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01764,121,533 - 64,208,824 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1764,121,816 - 64,261,397 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11762,856,148 - 62,942,476 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01762,914,217 - 63,001,200 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01763,673,954 - 63,761,078 (+)NCBIUU_Cfam_GSD_1.0
St7l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505816,292,700 - 16,507,312 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366901,024,599 - 1,184,090 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366901,018,324 - 1,184,703 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ST7L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4107,822,494 - 107,900,334 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14107,821,610 - 108,005,021 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24117,890,772 - 118,074,552 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ST7L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12021,017,051 - 21,119,802 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2021,017,600 - 21,111,922 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603823,832,630 - 23,936,789 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
St7l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247728,335,458 - 8,407,591 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247728,310,441 - 8,408,200 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000011326   ⟹   ENSCLAP00000011190
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495543515,979,927 - 16,048,036 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000011327   ⟹   ENSCLAP00000011191
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495543515,979,927 - 16,047,552 (-)Ensembl
RefSeq Acc Id: XM_005388963   ⟹   XP_005389020
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543515,963,053 - 16,048,036 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013516414   ⟹   XP_013371868
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543515,950,117 - 16,048,036 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013516415   ⟹   XP_013371869
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543515,963,053 - 16,048,036 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013516416   ⟹   XP_013371870
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543515,976,032 - 16,048,036 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013516417   ⟹   XP_013371871
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543515,938,815 - 16,048,036 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013516418   ⟹   XP_013371872
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495543515,963,053 - 16,048,237 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_005389020   ⟸   XM_005388963
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VD52 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013371871   ⟸   XM_013516417
- Peptide Label: isoform X5
- UniProtKB: A0A8C2VD52 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013371868   ⟸   XM_013516414
- Peptide Label: isoform X2
- UniProtKB: A0A8C2VD52 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013371872   ⟸   XM_013516418
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_013371869   ⟸   XM_013516415
- Peptide Label: isoform X3
- UniProtKB: A0A8C2VD52 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013371870   ⟸   XM_013516416
- Peptide Label: isoform X4
- UniProtKB: A0A8C2VD52 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000011191   ⟸   ENSCLAT00000011327
RefSeq Acc Id: ENSCLAP00000011190   ⟸   ENSCLAT00000011326


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000007732 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000011326 ENTREZGENE
  ENSCLAT00000011326.1 UniProtKB/TrEMBL
  ENSCLAT00000011327.1 UniProtKB/TrEMBL
InterPro ST7 UniProtKB/TrEMBL
NCBI Gene St7l ENTREZGENE
PANTHER PTHR12745 UniProtKB/TrEMBL
  SUPPRESSOR OF TUMORIGENICITY 7 PROTEIN-LIKE UniProtKB/TrEMBL
Pfam ST7 UniProtKB/TrEMBL
UniProt A0A8C2V988_CHILA UniProtKB/TrEMBL
  A0A8C2VD52 ENTREZGENE, UniProtKB/TrEMBL