Vps37d (VPS37D subunit of ESCRT-I)

Gene: Vps37d (VPS37D subunit of ESCRT-I) Chinchilla lanigera

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Symbol:

Vps37d

Name:

VPS37D subunit of ESCRT-I

RGD ID:

8701367

Description:

ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); genetic disease (ortholog); FOUND IN ESCRT I complex (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

vacuolar protein sorting 37 homolog D (S. cerevisiae); vacuolar protein sorting-associated protein 37D; VPS37D, ESCRT-I subunit

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955456	14,064,197 - 14,067,571 (-)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autism spectrum disorder (ISO)

autistic disorder (ISO)

genetic disease (ISO)

intestinal volvulus (ISO)

Neurodevelopmental Disorders (ISO)

pleomorphic xanthoastrocytoma (ISO)

schizophrenia (ISO)

Volvulus Of Midgut (ISO)

Williams-Beuren syndrome (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

ESCRT I complex (ISO)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Vps37d
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955456	14,064,197 - 14,067,571 (-)	NCBI	ChiLan1.0	ChiLan1.0

VPS37D
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	73,665,347 - 73,672,110 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	7	73,667,831 - 73,672,112 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	7	73,082,161 - 73,086,440 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	72,720,110 - 72,724,376 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	7	68,560,386 - 68,564,652 (+)	NCBI		Celera
Cytogenetic Map	7	q11.23	NCBI
HuRef	7	68,964,585 - 68,968,851 (+)	NCBI		HuRef
CHM1_1	7	73,227,882 - 73,232,148 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	7	74,866,261 - 74,873,025 (+)	NCBI		T2T-CHM13v2.0
CRA_TCAGchr7v2	7	72,415,246 - 72,419,512 (+)	NCBI

Vps37d
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	135,101,751 - 135,107,197 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	135,101,754 - 135,107,120 (-)	Ensembl		GRCm39 Ensembl
GRCm38	5	135,072,899 - 135,078,326 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	135,072,900 - 135,078,266 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	135,548,771 - 135,554,136 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	135,357,528 - 135,362,893 (-)	NCBI		MGSCv36	mm8
Celera	5	132,083,230 - 132,088,596 (-)	NCBI		Celera
Cytogenetic Map	5	G2	NCBI
cM Map	5	74.98	NCBI

Vps37d
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	27,245,755 - 27,251,214 (+)	NCBI		GRCr8
mRatBN7.2	12	21,609,210 - 21,614,669 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	21,609,182 - 21,614,659 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	12	22,751,393 - 22,756,872 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	23,363,710 - 23,369,189 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	22,430,392 - 22,435,893 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	24,651,342 - 24,656,793 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	24,651,314 - 24,656,793 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	12	26,650,992 - 26,656,900 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	12	23,372,828 - 23,378,264 (+)	NCBI		Celera
Cytogenetic Map	12	q12	NCBI

VPS37D
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	6	91,229,744 - 91,234,098 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	7	139,494,375 - 139,498,731 (-)	NCBI		NHGRI_mPanPan1
PanPan1.1	7	80,798,226 - 80,824,883 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	7	80,798,226 - 80,824,883 (+)	Ensembl	panpan1.1		panPan2

VPS37D
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	6,602,905 - 6,606,781 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	6,603,627 - 6,607,029 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	8,300,297 - 8,304,136 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	6,417,931 - 6,421,771 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	6,417,934 - 6,421,783 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	6,407,426 - 6,411,265 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	6,355,166 - 6,359,002 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	6,518,879 - 6,522,719 (-)	NCBI		UU_Cfam_GSD_1.0

Vps37d
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	131,145,659 - 131,148,853 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936543	2,887,708 - 2,890,946 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936543	2,887,723 - 2,890,907 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

VPS37D
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	10,947,403 - 10,951,273 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	10,947,403 - 10,951,271 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	10,645,945 - 10,649,803 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

VPS37D
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	28	9,393,163 - 9,398,387 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	28	9,393,354 - 9,398,378 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666070	7,104,401 - 7,108,754 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Vps37d
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624740	14,136,775 - 14,142,569 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624740	14,137,087 - 14,142,211 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005396773	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01046632	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBCE01185982	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_005396773 ⟹ XP_005396830

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955456	14,064,197 - 14,067,571 (-)	NCBI

Sequence:

show sequence

CCCGGGTGGCCGCGAGGCGTGTCCCCGCCGTGCCCCGGAGGAGGTGTGTTCTGGGCCCGGGGCG
GCCGGTGGCGGGGCCCTGGCTGCACACCCACGTTCGTAGGGCCAGAAAGGGGAGGCGGCTTCCG
CGGGGAGAACTAGGGGCCTGTTTGACACCTGGGGGGCCGTAGTGGGGAGCGATCTGCGCATTCT
GGGGGTGCAGGGGGCTTTGTGCCCGCCGCCGGGCGGGGAGGTGTGCGCCGTAGGCCACCATAGA
GAAAGTTGCTCTTCCGCGGGAGATAGGCCCGGGCTGGGCGGCTTGGGGGGCAGAGGGGAAAGTG
TGTGCTGGAGGGCGGCGGATGAGGAGGGGCGGGAGCAGCCGACAGGGGACAGATGGAGGGGAGC
GCCTTGCCCGCGCGGAGCGAGGCTCGGCCCTCCACAAACAGGGGGGCAGGCTTGTGGGGGGCCG
GGCCGCCTCCTGCAGGAGGAGAGCAGGAAGCAGGTGGTGGAGTCTGGGAGGAAAAGGGGTTCCA
GGGCCTGCAGCTGGAGCGAGAGGCCTGCCTGGCCTCCAACTACGCCCTGGCCAAGGAGAACCTG
GCACTGCGGCCCCGCCTGGAGATGGGCCGGGCCGCCCTGGCCATCAAGTACCAGGAGCTCCGAG
AGGTGGCCGAGAACTGCGCAGACAAGCTACAGCGACTGGAGGAGACCATGCATCGCTGGAGTCC
CCACTGTGCGCTGGGCTGGCTGCAGGCTGAGTTGGAAGAGGCTGAGCAGGAGGCTGAGGAGCAC
ATGGAGCAGCTGCTGCTGGGCGAGCAGAGCCTGGAGGCCTTCCTGCCCGCCTTCCAGCGTGGCC
GTGCCCTGGCCCACCTGAGGCGGACCCAGGCCGAGAAACTGCAGGAGCTGCTGCGGCGCAGGGA
GCGCTCTGCCCAGCCGGCCCCCACCACTGCCACCGATGCCCCCAAACCCTTCCCAGCTGCAGCC
GTCCTGCCCACTGGGGCTGCCCGGGGGCCACCCGCTGCACCCCGGAGCCTACCCCCCTTGGACT
CCCGCCCAGTGCCCCCGCTGAAGGGCTCCCCCGGGTGCCCCCTCGGCCCAGCACCTCTGCTAAG
CCCCCGGCCCTCTCAGCCAGAGCCCCCCCACCGGTAGGATCCAGGGTGCGGCCCCCCAGTGGGG
GGCCCAGACAAACTTGATTGGGGGTTCCTCCTCCTCCCCCACTGCCTGGGTGGGGGGAGGGGCA
GGCCCCTCCCCCTGGCCTCAGGCAGGCCCTGGCCCTGGAGGCTGAGCTGGGGAGGAGGTCATCT
GGAGGAGACCCCGAGAGGGCTGGGGTGGGTGGGCAGGGTGTTGGGCCCTGGCACTGAGGAACCT
CTGCCTTTGTTGTCTCCCCGGCTGGGGCTTCCAGGGCGGTGGGCCAGCCCCATGCAAGAACTTT
ACTCACCCTGGGGCCCAGGAAGGTACCCGCTTCTCTGGAGGCTCCGCCCAGGGGGCCTGTTGCA
CCCTGCTGCTCCATGGGGCTCGAACAACGCCAAGGCCAGCGGGCGTGTTTTCCATCACGTCCTG
AGCCTACCTTTCCCCCAGCTCTGGAGCCACCGCCTAGGAGCCAGCGGCCAGGCCCCAGCTGTGG
GGCCAGGACGCCGTGGCCCTGGGCCCGCTCCGGGACCCTCTCCTGCTCCAGTCCCTGGGCCAGG
GTAGGCCGGGGGCGTCTGACCTGCACAGGCAAGAGTGGGCCATCCCCAGGAAAGACCATTCTGT
ATTTTTCTGTCCCTGTCTCCTTAGAATGGAACCTTTTTGAGGGCAGGTCCTTGTCTTTGTATGT
TCTGTCCCCAGCCCCGCCTCCTAGGGGCCGTCAATAAATGTGATGATGAAGA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005396830	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000009393.1

RefSeq Acc Id:

XP_005396830 ⟸ XM_005396773

- UniProtKB:

A0A8C2V2N0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MEGSALPARSEARPSTNRGAGLWGAGPPPAGGEQEAGGGVWEEKGFQGLQLEREACLASNYALA
KENLALRPRLEMGRAALAIKYQELREVAENCADKLQRLEETMHRWSPHCALGWLQAELEEAEQE
AEEHMEQLLLGEQSLEAFLPAFQRGRALAHLRRTQAEKLQELLRRRERSAQPAPTTATDAPKPF
PAAAVLPTGAARGPPAAPRSLPPLDSRPVPPLKGSPGCPLGPAPLLSPRPSQPEPPHR

hide sequence

Protein Domains

VPS37 C-terminal

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000006521	UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000009522.1	UniProtKB/TrEMBL
InterPro	Mod_r	UniProtKB/TrEMBL
NCBI Gene	Vps37d	ENTREZGENE
PANTHER	VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 37	UniProtKB/TrEMBL
	VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 37D	UniProtKB/TrEMBL
Pfam	Mod_r	UniProtKB/TrEMBL
PROSITE	VPS37_C	UniProtKB/TrEMBL
UniProt	A0A8C2V2N0	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2019-02-05	Vps37d	VPS37D subunit of ESCRT-I		VPS37D, ESCRT-I subunit	Symbol and/or name change	5135510	APPROVED
2016-08-03	Vps37d	VPS37D, ESCRT-I subunit		vacuolar protein sorting 37 homolog D (S. cerevisiae)	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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