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Gene: Kcnk7 (potassium two pore domain channel subfamily K member 7) Chinchilla lanigera

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Symbol:

Kcnk7

Name:

potassium two pore domain channel subfamily K member 7

RGD ID:

8700923

Description:

ASSOCIATED WITH Aicardi-Goutieres Syndrome 3 (ortholog); Bardet-Biedl syndrome (ortholog); glycogen storage disease V (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

potassium channel subfamily K member 7; potassium channel, subfamily K, member 7; potassium channel, two pore domain subfamily K, member 7

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955422	19,666,974 - 19,670,449 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955422	19,666,974 - 19,670,449 (+)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Aicardi-Goutieres Syndrome 3 (ISO)

Bardet-Biedl syndrome (ISO)

glycogen storage disease V (ISO)

high grade glioma (ISO)

intellectual disability (ISO)

Recurrent Infections, with Encephalopathy, Hepatic Dysfunction, and Cardiovascular Malformations (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Kcnk7
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955422	19,666,974 - 19,670,449 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955422	19,666,974 - 19,670,449 (+)	NCBI	ChiLan1.0	ChiLan1.0

KCNK7
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	65,592,836 - 65,595,800 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	65,592,836 - 65,595,996 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	65,360,307 - 65,363,271 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	65,116,902 - 65,120,043 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	11	62,687,036 - 62,690,177 (-)	NCBI		Celera
Cytogenetic Map	11	q13.1	NCBI
HuRef	11	61,687,292 - 61,690,433 (-)	NCBI		HuRef
CHM1_1	11	65,244,223 - 65,247,364 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	11	65,587,069 - 65,590,033 (-)	NCBI		T2T-CHM13v2.0

Kcnk7
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	19	5,754,471 - 5,757,956 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	19	5,754,395 - 5,757,137 (+)	Ensembl		GRCm39 Ensembl
GRCm38	19	5,704,471 - 5,707,984 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	19	5,704,367 - 5,707,109 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	19	5,704,476 - 5,707,101 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	19	5,704,476 - 5,707,101 (+)	NCBI		MGSCv36	mm8
Celera	19	5,574,527 - 5,577,151 (+)	NCBI		Celera
Cytogenetic Map	19	A	NCBI
cM Map	19	4.34	NCBI

Kcnk7
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	212,419,555 - 212,422,173 (+)	NCBI		GRCr8
mRatBN7.2	1	202,988,801 - 202,992,842 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	202,990,198 - 202,992,872 (+)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	1	221,056,477 - 221,060,607 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	221,057,713 - 221,060,747 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	227,991,803 - 227,995,929 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	208,327,893 - 208,330,476 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	1	200,524,457 - 200,528,587 (+)	NCBI		Celera
Cytogenetic Map	1	q43	NCBI

KCNK7
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	66,822,501 - 66,827,369 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	67,865,262 - 67,870,121 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	60,951,961 - 60,955,240 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	64,286,502 - 64,289,737 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	64,286,502 - 64,289,662 (-)	Ensembl	panpan1.1		panPan2

KCNK7
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	18	51,609,373 - 51,613,802 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	18	51,610,746 - 51,613,675 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	18	50,217,779 - 50,222,188 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	18	52,646,545 - 52,650,954 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	18	52,647,896 - 52,650,826 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	18	51,746,437 - 51,750,846 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	18	51,320,479 - 51,324,886 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	18	52,110,874 - 52,115,286 (+)	NCBI		UU_Cfam_GSD_1.0

Kcnk7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	7,421,720 - 7,424,649 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936599	3,864,097 - 3,866,994 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936599	3,864,110 - 3,866,998 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

KCNK7
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	6,659,054 - 6,662,288 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	6,657,841 - 6,662,445 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	5,881,587 - 5,887,312 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

KCNK7
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	8,644,038 - 8,648,132 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	8,645,231 - 8,647,963 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	105,938,769 - 105,942,856 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Kcnk7
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624767	20,796,809 - 20,799,915 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624767	20,796,733 - 20,799,915 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005384475	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01023026	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBCB01035404	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCLAT00000023159 ⟹ ENSCLAP00000022943

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955422	19,666,974 - 19,670,449 (+)	Ensembl

RefSeq Acc Id:

XM_005384475 ⟹ XP_005384532

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955422	19,666,974 - 19,670,449 (+)	NCBI

Sequence:

show sequence

CCCCCGGGTTTGTTTTACCTCACTCTCCTCCCCTACCGGATCCACCTTGAACCCCACTGTCCCA
GTCCCACCTCTGCCCATCCCACCCAGGACGCCTCCTTATCCAATCTCCCCATGGTCTCCCTGAG
CCATACTTGTCCTCAAAGGCCTGTGTCCTCCCTACACCCCGGGCGCTTGCCCACGACTGGCTGC
TGCTTGGGCTCCAGCTGGTAGCCCTCCCCCGTATGCTCCATTACCTGGGCGTTTCCTGCTCAGA
ACCTAATAACGAGGTGCAGAGCTGCATCTTCTTGCTCACGGCTTTCTTGGGTGTGCACCAGGAG
GGAAGGGACCAGTGTCTGAGTGAAATCGGGTGTGTGCCGTGGACGGACCACGTCTGTGAAGAAG
TGTGAGGCTTGCCCTGGGCTTCTCGCCCTGCCCTCAACCTCACCCCAGCTACTGTGAAATGGCT
CACAAGGTCGTGCCCCGAGAAACTGGGAGGACAGCTTACCTCCCTGCCATTCTTGATCACCCCA
GCCCTGTGGCAGCCACCCACACAGCACCTCCTCCTCCTTCCAGCCCCGCCCGGCAGGCTCCTCC
CAAGGGCCAGTGGGGAAACAGGATCTCCCACAGCACCCCAAACTCAGCACTGCACTATGTGGGT
TCTGAGGCCCTGGACCCGATTTGCGCTTTTGGTCATGGCCCACATGCTGGCCATGGGGCTAGGG
GCTGTGGTGCTCCAGGCCCTGGAGGGTCCTCCTGCACTCCAGCTCCAGGCCAAGCTCCAGGCTG
AGCTGGCTGCCTTCCAGGCAGAGTTTGGGGCCTGCTTGCCACATGGAGCCCTGGAAGAGCTGCT
GGGCACAGCCCTGAGGGCACAGGCTCATGGAGTCTCCAGCCTGGGCAACAGCTCAGAGGCCAGC
AACTGGGACCTATCCTCAGCCCTGCTTTTCACTGTCAGCATCCTCACTACCACGGGTTATGGCC
ACATGGCCCCACTCTCCGCAGGTGGAAAGGCCTTCTGTGTAGTCTATGCAGCTCTAGGGCTGCC
AGCTTCCCTAGCACTTGTGGCTGCCCTGCGCCACTGCCTGCTGCCTGTGCTCAGCCGCCCAGGT
GCCTGGGTAGCCAGTCGCTGGCAGTTGGCACCAGCCCAGGCTGCACTGTTGCAGGCAGCAGGGC
TGGGCCTTCTGGTGGCTGGTATCTTCGTGCTGCTGCCAGCACTGGTGCTGTGGGGTCTACAGGA
TGACCGCAGCCTGCTGGAGGCCGTCTACTTCTGCTTCAGCTCACTCAGCACCATCGGCCTGGCA
GACTTGCTGCCAGGCAGTGGCCAAGGCCTGCATCCGGTGATTTACCAGCTCGGCCACTTCGCAC
TTCTTGGTTACTTGCTCCTAGGGCTCCTGGCCATGCTGCTGGCAGTGGAGGCCTTCACAGAGCT
GCCACAGGTCTGTGCCGTGGTGAAGTTCTTTGGGGTCAGTACCCCTGAAACTGCTGAGGACCAA
GATGGCATTGTGAGCCAGGATGAGCTGGCTCTGAACAACTTGCCTCCTGCCACCCCTGCCTCCG
AACAAGCCCCGGCTTGCGGACAGGTGTCAGGTGACTGCATGTAGCTCCTCTGAGGTGGCGGATC
GTGAGGAGGAAGCAGTCATGAGTACTCGGGGAAGAATCGGCGATGGCAGGGTTGGGAGGGGGAG
ATTGTAGGGAATGGTGTGCTAATTTTTTAAAAAGGCAACAACTTGCTCAACTTTGTTTTTGGTG
TCTT

hide sequence

Protein Sequences


Protein RefSeqs	XP_005384532	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000022943
	ENSCLAP00000022943.1

RefSeq Acc Id:

XP_005384532 ⟸ XM_005384475

- UniProtKB:

A0A8C2W471 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MWVLRPWTRFALLVMAHMLAMGLGAVVLQALEGPPALQLQAKLQAELAAFQAEFGACLPHGALE
ELLGTALRAQAHGVSSLGNSSEASNWDLSSALLFTVSILTTTGYGHMAPLSAGGKAFCVVYAAL
GLPASLALVAALRHCLLPVLSRPGAWVASRWQLAPAQAALLQAAGLGLLVAGIFVLLPALVLWG
LQDDRSLLEAVYFCFSSLSTIGLADLLPGSGQGLHPVIYQLGHFALLGYLLLGLLAMLLAVEAF
TELPQVCAVVKFFGVSTPETAEDQDGIVSQDELALNNLPPATPASEQAPACGQVSGDCM

hide sequence

Ensembl Acc Id:

ENSCLAP00000022943 ⟸ ENSCLAT00000023159

Protein Domains

Potassium channel

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000015744	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000023159	ENTREZGENE
	ENSCLAT00000023159.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.287.70	UniProtKB/TrEMBL
InterPro	2pore_dom_K_chnl	UniProtKB/TrEMBL
	2pore_dom_K_chnl_TASK	UniProtKB/TrEMBL
	2pore_dom_K_chnl_TWIK	UniProtKB/TrEMBL
	K_chnl_dom	UniProtKB/TrEMBL
NCBI Gene	Kcnk7	ENTREZGENE
PANTHER	POTASSIUM CHANNEL SUBFAMILY K MEMBER 7	UniProtKB/TrEMBL
	PTHR11003	UniProtKB/TrEMBL
Pfam	Ion_trans_2	UniProtKB/TrEMBL
PIRSF	K_channel_subfamily_K_type	UniProtKB/TrEMBL
PRINTS	2POREKCHANEL	UniProtKB/TrEMBL
	TWIKCHANNEL	UniProtKB/TrEMBL
Superfamily-SCOP	Voltage-gated potassium channels	UniProtKB/TrEMBL
UniProt	A0A8C2W471	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-08-03	Kcnk7	potassium two pore domain channel subfamily K member 7		potassium channel, two pore domain subfamily K, member 7	Symbol and/or name change	5135510	APPROVED
2015-08-25	Kcnk7	potassium channel, two pore domain subfamily K, member 7		potassium channel, subfamily K, member 7	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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