Utp25 (UTP25 small subunit processor component) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Utp25 (UTP25 small subunit processor component) Chinchilla lanigera
Analyze
Symbol: Utp25
Name: UTP25 small subunit processor component
RGD ID: 8699929
Description: INVOLVED IN embryonic organ development (ortholog); positive regulation of embryonic development (ortholog); protein catabolic process (ortholog); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); Hirschsprung's disease (ortholog); parathyroid carcinoma (ortholog); FOUND IN nucleolus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: Diexf; digestive organ expansion factor homolog; digestive organ expansion factor homolog (zebrafish); UTP25, small subunit processor component
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554892,339,745 - 2,387,103 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554892,362,290 - 2,387,162 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleolus  (ISO)

Molecular Function

References


Genomics

Comparative Map Data
Utp25
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554892,339,745 - 2,387,103 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554892,362,290 - 2,387,162 (-)NCBIChiLan1.0ChiLan1.0
UTP25
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1209,827,972 - 209,857,565 (+)EnsemblGRCh38hg38GRCh38
GRCh381209,827,972 - 209,857,565 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371210,001,317 - 210,030,910 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361208,067,956 - 208,097,531 (+)NCBINCBI36hg18NCBI36
Celera1183,232,203 - 183,261,798 (+)NCBI
Cytogenetic Map1q32.2NCBI
HuRef1180,676,427 - 180,706,025 (+)NCBIHuRef
CHM1_11211,273,584 - 211,303,174 (+)NCBICHM1_1
Utp25
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391192,786,707 - 192,812,603 (-)NCBIGRCm39mm39
GRCm39 Ensembl1192,773,412 - 192,812,580 (-)Ensembl
GRCm381193,104,399 - 193,130,283 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1193,091,104 - 193,130,272 (-)EnsemblGRCm38mm10GRCm38
MGSCv371194,930,597 - 194,956,445 (-)NCBIGRCm37mm9NCBIm37
MGSCv361194,805,127 - 194,830,975 (-)NCBImm8
Celera1199,979,507 - 200,005,362 (-)NCBICelera
Cytogenetic Map1H6NCBI
Utp25
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.213104,630,390 - 104,651,681 (-)NCBI
Rnor_6.0 Ensembl13111,828,043 - 111,849,653 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.013111,828,052 - 111,849,654 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.013116,382,860 - 116,404,451 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.413108,945,112 - 108,966,381 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.113109,134,216 - 109,155,439 (-)NCBI
Celera13104,060,438 - 104,081,707 (-)NCBICelera
Cytogenetic Map13q27NCBI
UTP25
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11190,268,857 - 190,292,729 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1190,268,857 - 190,292,980 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01185,403,715 - 185,433,830 (+)NCBIMhudiblu_PPA_v0panPan3
UTP25
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.178,477,026 - 8,512,713 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl78,488,350 - 8,512,705 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha78,065,263 - 8,090,352 (+)NCBI
ROS_Cfam_1.078,188,707 - 8,214,441 (+)NCBI
UMICH_Zoey_3.178,118,398 - 8,143,450 (+)NCBI
UNSW_CanFamBas_1.078,215,411 - 8,240,320 (+)NCBI
UU_Cfam_GSD_1.078,242,865 - 8,266,776 (-)NCBI
Utp25
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934466,003,992 - 66,028,584 (-)NCBI
SpeTri2.0NW_0049365573,244,274 - 3,268,853 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UTP25
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9133,105,063 - 133,141,217 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19133,115,177 - 133,141,258 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29146,382,511 - 146,400,265 (-)NCBISscrofa10.2Sscrofa10.2susScr3
UTP25
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12519,601,165 - 19,625,274 (-)NCBI
ChlSab1.1 Ensembl2519,600,266 - 19,625,229 (-)Ensembl
Vero_WHO_p1.0NW_02366605520,200,305 - 20,224,419 (-)NCBI
Utp25
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248072,069,501 - 2,166,859 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000006326   ⟹   ENSCLAP00000006223
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554892,339,745 - 2,387,103 (-)Ensembl
RefSeq Acc Id: ENSCLAT00000006327   ⟹   ENSCLAP00000006224
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554892,362,645 - 2,387,103 (-)Ensembl
RefSeq Acc Id: XM_005404524   ⟹   XP_005404581
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554892,362,290 - 2,387,162 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005404581 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005404581   ⟸   XM_005404524
- Sequence:
RefSeq Acc Id: ENSCLAP00000006224   ⟸   ENSCLAT00000006327
RefSeq Acc Id: ENSCLAP00000006223   ⟸   ENSCLAT00000006326


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000004405 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000006224 ENTREZGENE
Ensembl Transcript ENSCLAT00000006327 ENTREZGENE
NCBI Gene Diexf ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-01-29 Utp25  UTP25 small subunit processor component    UTP25, small subunit processor component  Symbol and/or name change 5135510 APPROVED
2018-04-17 Utp25  UTP25, small subunit processor component  Diexf  digestive organ expansion factor homolog (zebrafish)  Symbol and/or name change 5135510 APPROVED