HOXA-AS2 (HOXA cluster antisense RNA 2)

Gene: HOXA-AS2 (HOXA cluster antisense RNA 2) Homo sapiens

Analyze

Symbol:

HOXA-AS2

Name:

HOXA cluster antisense RNA 2

RGD ID:

8663289

HGNC Page

HGNC:43745

Description:

This gene produces a long non-coding RNA that promotes cell proliferation. This transcript may interact with enhancer of zeste homolog 2 Polycomb repressive complex to repress gene expression. [provided by RefSeq, Dec 2017]

Type:

ncrna (Ensembl: lncRNA)

RefSeq Status:

REVIEWED

Previously known as:

HOXA3as

Allele / Splice:

See ClinVar data

Latest Assembly:

GRCh38 - Human Genome Assembly GRCh38

Position:

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	27,121,919 - 27,128,760 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	7	27,107,777 - 27,134,302 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	7	27,161,538 - 27,168,379 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	27,127,321 - 27,135,662 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	7	27,138,977 - 27,152,374 (+)	NCBI		Celera
Cytogenetic Map	7	p15.2	NCBI
HuRef	7	27,041,308 - 27,048,942 (+)	NCBI		HuRef
CHM1_1	7	27,149,427 - 27,168,083 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	7	27,257,897 - 27,264,741 (+)	NCBI		T2T-CHM13v2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

2,3,7,8-tetrachlorodibenzodioxine (EXP)

belinostat (EXP)

benzo[a]pyrene (EXP)

butanal (EXP)

formaldehyde (EXP)

lipopolysaccharide (EXP)

malathion (EXP)

permethrin (EXP)

sodium arsenite (EXP)

triclosan (EXP)

vorinostat (EXP)

zoledronic acid (EXP)

References

References - curated

#	Reference Title	Reference Citation
1.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:14702039	PMID:21112873	PMID:23649634	PMID:25108383	PMID:26384350	PMID:27855366	PMID:28112720	PMID:28388535	PMID:28545023	PMID:29118916	PMID:29417297
PMID:30081707	PMID:30375256	PMID:30384358	PMID:30412716	PMID:30415263	PMID:30466095	PMID:30551418	PMID:30658190	PMID:30993766	PMID:31210310	PMID:31389597	PMID:31957850
PMID:32030967	PMID:32048402	PMID:32147422	PMID:32369230	PMID:32519740	PMID:33116460	PMID:33174119	PMID:33268767	PMID:33683826	PMID:34076871	PMID:34511122	PMID:34519570
PMID:35181676	PMID:35563134	PMID:35730141	PMID:36404720	PMID:36479381	PMID:36528556

Genomics

Variants

Variants in HOXA-AS2
1 total Variants

Clinical Variants

Name	Type	Condition(s)	Position(s)	Clinical significance
GRCh38/hg38 7p21.1-15.2(chr7:20210912-27849400)x1	copy number loss	See cases [RCV000134333]	Chr7:20210912..27849400 [GRCh38] Chr7:20250535..27889019 [GRCh37] Chr7:20217060..27855544 [NCBI36] Chr7:7p21.1-15.2	pathogenic
GRCh38/hg38 7p22.3-q36.3(chr7:54185-159282390)x1	copy number loss	See cases [RCV000135401]	Chr7:54185..159282390 [GRCh38] Chr7:54185..159075079 [GRCh37] Chr7:149268..158767840 [NCBI36] Chr7:7p22.3-q36.3	pathogenic
GRCh38/hg38 7p21.1-14.3(chr7:20561456-32005143)x1	copy number loss	See cases [RCV000136775]	Chr7:20561456..32005143 [GRCh38] Chr7:20601079..32044755 [GRCh37] Chr7:20567604..32011280 [NCBI36] Chr7:7p21.1-14.3	pathogenic
GRCh38/hg38 7p22.1-15.2(chr7:5682209-27230311)x3	copy number gain	See cases [RCV000136649]	Chr7:5682209..27230311 [GRCh38] Chr7:5721840..27269930 [GRCh37] Chr7:5688366..27236455 [NCBI36] Chr7:7p22.1-15.2	pathogenic
GRCh38/hg38 7p22.3-15.2(chr7:1698124-27207295)x3	copy number gain	See cases [RCV000143060]	Chr7:1698124..27207295 [GRCh38] Chr7:1737760..27246914 [GRCh37] Chr7:1704286..27213439 [NCBI36] Chr7:7p22.3-15.2	pathogenic
GRCh38/hg38 7p22.3-15.2(chr7:43360-27196404)x3	copy number gain	See cases [RCV000143586]	Chr7:43360..27196404 [GRCh38] Chr7:43360..27236023 [GRCh37] Chr7:138443..27202548 [NCBI36] Chr7:7p22.3-15.2	pathogenic
GRCh38/hg38 7p22.3-14.1(chr7:54185-41875885)x3	copy number gain	See cases [RCV000051159]	Chr7:54185..41875885 [GRCh38] Chr7:54185..41915483 [GRCh37] Chr7:149268..41882008 [NCBI36] Chr7:7p22.3-14.1	pathogenic
GRCh38/hg38 7p22.3-q36.3(chr7:53985-159282531)x1	copy number loss	See cases [RCV000052250]	Chr7:53985..159282531 [GRCh38] Chr7:53985..159075220 [GRCh37] Chr7:149068..158767981 [NCBI36] Chr7:7p22.3-q36.3	pathogenic
GRCh38/hg38 7p15.2-14.3(chr7:25511691-30421133)x1	copy number loss	See cases [RCV000052310]	Chr7:25511691..30421133 [GRCh38] Chr7:25551310..30460749 [GRCh37] Chr7:25517835..30427274 [NCBI36] Chr7:7p15.2-14.3	pathogenic
GRCh38/hg38 7p15.2(chr7:27107301-27314586)x3	copy number gain	Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053436]\|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053436]\|See cases [RCV000053436]	Chr7:27107301..27314586 [GRCh38] Chr7:27146920..27354205 [GRCh37] Chr7:27113445..27320730 [NCBI36] Chr7:7p15.2	uncertain significance
GRCh38/hg38 7p22.3-14.2(chr7:54185-37089712)x3	copy number gain	See cases [RCV000053530]	Chr7:54185..37089712 [GRCh38] Chr7:54185..37129317 [GRCh37] Chr7:149268..37095842 [NCBI36] Chr7:7p22.3-14.2	pathogenic

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	2267
Count of miRNA genes:	838
Interacting mature miRNAs:	1000
Transcripts:	ENST00000517550, ENST00000517635, ENST00000517641, ENST00000518046, ENST00000518088, ENST00000521159, ENST00000521687, ENST00000522193, ENST00000523364, ENST00000524048, ENST00000593438
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region

SGC33676

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	27,162,372 - 27,162,499	UniSTS	GRCh37
Build 36	7	27,128,897 - 27,129,024	RGD	NCBI36
Celera	7	27,151,309 - 27,151,436	RGD
Cytogenetic Map	7	p15.2	UniSTS
HuRef	7	27,042,943 - 27,043,070	UniSTS
CRA_TCAGchr7v2	7	27,213,527 - 27,213,654	UniSTS
GeneMap99-GB4 RH Map	7	116.46	UniSTS
Whitehead-RH Map	7	74.4	UniSTS
NCBI RH Map	7	448.7	UniSTS

RH16603

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	27,162,278 - 27,162,454	UniSTS	GRCh37
Build 36	7	27,128,803 - 27,128,979	RGD	NCBI36
Celera	7	27,151,215 - 27,151,391	RGD
Cytogenetic Map	7	p15.2	UniSTS
HuRef	7	27,042,849 - 27,043,025	UniSTS
CRA_TCAGchr7v2	7	27,213,433 - 27,213,609	UniSTS
GeneMap99-GB4 RH Map	7	115.64	UniSTS
NCBI RH Map	7	417.3	UniSTS

A008T18

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	27,162,270 - 27,162,449	UniSTS	GRCh37
Build 36	7	27,128,795 - 27,128,974	RGD	NCBI36
Celera	7	27,151,207 - 27,151,386	RGD
Cytogenetic Map	7	p15.2	UniSTS
HuRef	7	27,042,841 - 27,043,020	UniSTS
CRA_TCAGchr7v2	7	27,213,425 - 27,213,604	UniSTS
GeneMap99-GB4 RH Map	7	110.59	UniSTS
NCBI RH Map	7	436.7	UniSTS

ECD00057

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	27,160,917 - 27,161,863	UniSTS	GRCh37
Build 36	7	27,127,442 - 27,128,388	RGD	NCBI36
Celera	7	27,149,854 - 27,150,800	RGD
Cytogenetic Map	7	p15.2	UniSTS
HuRef	7	27,041,488 - 27,042,434	UniSTS
CRA_TCAGchr7v2	7	27,212,072 - 27,213,018	UniSTS

ECD00069

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	27,161,909 - 27,162,852	UniSTS	GRCh37
Build 36	7	27,128,434 - 27,129,377	RGD	NCBI36
Celera	7	27,150,846 - 27,151,789	RGD
Cytogenetic Map	7	p15.2	UniSTS
HuRef	7	27,042,480 - 27,043,423	UniSTS
CRA_TCAGchr7v2	7	27,213,064 - 27,214,007	UniSTS

ECD00083

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	27,157,951 - 27,158,891	UniSTS	GRCh37
Build 36	7	27,124,476 - 27,125,416	RGD	NCBI36
Celera	7	27,146,889 - 27,147,829	RGD
Cytogenetic Map	7	p15.2	UniSTS
HuRef	7	27,038,524 - 27,039,464	UniSTS
CRA_TCAGchr7v2	7	27,209,106 - 27,210,046	UniSTS

ECD00474

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	27,162,916 - 27,163,820	UniSTS	GRCh37
Build 36	7	27,129,441 - 27,130,345	RGD	NCBI36
Celera	7	27,151,853 - 27,152,757	RGD
Cytogenetic Map	7	p15.2	UniSTS
HuRef	7	27,043,487 - 27,044,391	UniSTS
CRA_TCAGchr7v2	7	27,214,071 - 27,214,975	UniSTS

ECD00785

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	27,158,967 - 27,159,857	UniSTS	GRCh37
Build 36	7	27,125,492 - 27,126,382	RGD	NCBI36
Celera	7	27,147,905 - 27,148,795	RGD
Cytogenetic Map	7	p15.2	UniSTS
HuRef	7	27,039,540 - 27,040,430	UniSTS
CRA_TCAGchr7v2	7	27,210,122 - 27,211,012	UniSTS

ECD04651

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	27,149,114 - 27,149,872	UniSTS	GRCh37
Build 36	7	27,115,639 - 27,116,397	RGD	NCBI36
Celera	7	27,138,052 - 27,138,810	RGD
Cytogenetic Map	7	p15.2	UniSTS
HuRef	7	27,029,705 - 27,030,463	UniSTS
CRA_TCAGchr7v2	7	27,200,267 - 27,201,025	UniSTS

ECD05530

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	27,148,342 - 27,149,075	UniSTS	GRCh37
Build 36	7	27,114,867 - 27,115,600	RGD	NCBI36
Celera	7	27,137,280 - 27,138,013	RGD
Cytogenetic Map	7	p15.2	UniSTS
HuRef	7	27,028,933 - 27,029,666	UniSTS
CRA_TCAGchr7v2	7	27,199,495 - 27,200,228	UniSTS

ECD05879

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	27,155,577 - 27,156,301	UniSTS	GRCh37
Build 36	7	27,122,102 - 27,122,826	RGD	NCBI36
Celera	7	27,144,515 - 27,145,239	RGD
Cytogenetic Map	7	p15.2	UniSTS
HuRef	7	27,036,355 - 27,037,079	UniSTS
CRA_TCAGchr7v2	7	27,206,732 - 27,207,456	UniSTS

ECD06202

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	27,157,149 - 27,157,864	UniSTS	GRCh37
Build 36	7	27,123,674 - 27,124,389	RGD	NCBI36
Celera	7	27,146,087 - 27,146,802	RGD
Cytogenetic Map	7	p15.2	UniSTS
CRA_TCAGchr7v2	7	27,208,304 - 27,209,019	UniSTS

ECD06343

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	27,151,133 - 27,151,844	UniSTS	GRCh37
Build 36	7	27,117,658 - 27,118,369	RGD	NCBI36
Celera	7	27,140,071 - 27,140,782	RGD
Cytogenetic Map	7	p15.2	UniSTS
HuRef	7	27,031,724 - 27,032,435	UniSTS
CRA_TCAGchr7v2	7	27,202,286 - 27,202,997	UniSTS

ECD06977

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	27,156,344 - 27,157,038	UniSTS	GRCh37
Build 36	7	27,122,869 - 27,123,563	RGD	NCBI36
Celera	7	27,145,282 - 27,145,976	RGD
Cytogenetic Map	7	p15.2	UniSTS
CRA_TCAGchr7v2	7	27,207,499 - 27,208,193	UniSTS

ECD08310

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	27,151,999 - 27,152,657	UniSTS	GRCh37
Build 36	7	27,118,524 - 27,119,182	RGD	NCBI36
Celera	7	27,140,937 - 27,141,595	RGD
Cytogenetic Map	7	p15.2	UniSTS
HuRef	7	27,032,590 - 27,033,248	UniSTS
CRA_TCAGchr7v2	7	27,203,152 - 27,203,810	UniSTS

ECD08311

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	27,152,714 - 27,153,372	UniSTS	GRCh37
Build 36	7	27,119,239 - 27,119,897	RGD	NCBI36
Celera	7	27,141,652 - 27,142,310	RGD
Cytogenetic Map	7	p15.2	UniSTS
HuRef	7	27,033,305 - 27,033,963	UniSTS
CRA_TCAGchr7v2	7	27,203,867 - 27,204,525	UniSTS

ECD10826

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	27,160,241 - 27,160,831	UniSTS	GRCh37
Build 36	7	27,126,766 - 27,127,356	RGD	NCBI36
Celera	7	27,149,179 - 27,149,769	RGD
Cytogenetic Map	7	p15.2	UniSTS
HuRef	7	27,040,814 - 27,041,404	UniSTS
CRA_TCAGchr7v2	7	27,211,396 - 27,211,986	UniSTS

ECD13744

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	27,153,842 - 27,154,352	UniSTS	GRCh37
Build 36	7	27,120,367 - 27,120,877	RGD	NCBI36
Celera	7	27,142,780 - 27,143,290	RGD
Cytogenetic Map	7	p15.2	UniSTS
HuRef	7	27,034,579 - 27,035,089	UniSTS
CRA_TCAGchr7v2	7	27,204,995 - 27,205,505	UniSTS

ECD14331

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	27,150,564 - 27,151,060	UniSTS	GRCh37
Build 36	7	27,117,089 - 27,117,585	RGD	NCBI36
Celera	7	27,139,502 - 27,139,998	RGD
Cytogenetic Map	7	p15.2	UniSTS
HuRef	7	27,031,155 - 27,031,651	UniSTS
CRA_TCAGchr7v2	7	27,201,717 - 27,202,213	UniSTS

ECD14332

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	27,155,038 - 27,155,534	UniSTS	GRCh37
Build 36	7	27,121,563 - 27,122,059	RGD	NCBI36
Celera	7	27,143,976 - 27,144,472	RGD
Cytogenetic Map	7	p15.2	UniSTS
HuRef	7	27,035,816 - 27,036,312	UniSTS
CRA_TCAGchr7v2	7	27,206,193 - 27,206,689	UniSTS

ECD14369

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	27,150,055 - 27,150,550	UniSTS	GRCh37
Build 36	7	27,116,580 - 27,117,075	RGD	NCBI36
Celera	7	27,138,993 - 27,139,488	RGD
Cytogenetic Map	7	p15.2	UniSTS
HuRef	7	27,030,646 - 27,031,141	UniSTS
CRA_TCAGchr7v2	7	27,201,208 - 27,201,703	UniSTS

ECD15467

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	27,154,524 - 27,154,993	UniSTS	GRCh37
Build 36	7	27,121,049 - 27,121,518	RGD	NCBI36
Celera	7	27,143,462 - 27,143,931	RGD
Cytogenetic Map	7	p15.2	UniSTS
HuRef	7	27,035,300 - 27,035,771	UniSTS
CRA_TCAGchr7v2	7	27,205,677 - 27,206,148	UniSTS

REN100369

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	27,148,930 - 27,149,188	UniSTS	GRCh37
Build 36	7	27,115,455 - 27,115,713	RGD	NCBI36
Celera	7	27,137,868 - 27,138,126	RGD
Cytogenetic Map	7	p15.2	UniSTS
HuRef	7	27,029,521 - 27,029,779	UniSTS
CRA_TCAGchr7v2	7	27,200,083 - 27,200,341	UniSTS

REN100370

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	27,149,154 - 27,149,384	UniSTS	GRCh37
Build 36	7	27,115,679 - 27,115,909	RGD	NCBI36
Celera	7	27,138,092 - 27,138,322	RGD
Cytogenetic Map	7	p15.2	UniSTS
HuRef	7	27,029,745 - 27,029,975	UniSTS
CRA_TCAGchr7v2	7	27,200,307 - 27,200,537	UniSTS

REN100371

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	27,149,353 - 27,149,585	UniSTS	GRCh37
Build 36	7	27,115,878 - 27,116,110	RGD	NCBI36
Celera	7	27,138,291 - 27,138,523	RGD
Cytogenetic Map	7	p15.2	UniSTS
HuRef	7	27,029,944 - 27,030,176	UniSTS
CRA_TCAGchr7v2	7	27,200,506 - 27,200,738	UniSTS

REN100372

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	27,149,550 - 27,149,789	UniSTS	GRCh37
Build 36	7	27,116,075 - 27,116,314	RGD	NCBI36
Celera	7	27,138,488 - 27,138,727	RGD
Cytogenetic Map	7	p15.2	UniSTS
HuRef	7	27,030,141 - 27,030,380	UniSTS
CRA_TCAGchr7v2	7	27,200,703 - 27,200,942	UniSTS

REN100373

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	27,149,766 - 27,150,026	UniSTS	GRCh37
Build 36	7	27,116,291 - 27,116,551	RGD	NCBI36
Celera	7	27,138,704 - 27,138,964	RGD
Cytogenetic Map	7	p15.2	UniSTS
HuRef	7	27,030,357 - 27,030,617	UniSTS
CRA_TCAGchr7v2	7	27,200,919 - 27,201,179	UniSTS

REN100374

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	27,150,008 - 27,150,244	UniSTS	GRCh37
Build 36	7	27,116,533 - 27,116,769	RGD	NCBI36
Celera	7	27,138,946 - 27,139,182	RGD
Cytogenetic Map	7	p15.2	UniSTS
HuRef	7	27,030,599 - 27,030,835	UniSTS
CRA_TCAGchr7v2	7	27,201,161 - 27,201,397	UniSTS

REN100375

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	27,150,231 - 27,150,494	UniSTS	GRCh37
Build 36	7	27,116,756 - 27,117,019	RGD	NCBI36
Celera	7	27,139,169 - 27,139,432	RGD
Cytogenetic Map	7	p15.2	UniSTS
HuRef	7	27,030,822 - 27,031,085	UniSTS
CRA_TCAGchr7v2	7	27,201,384 - 27,201,647	UniSTS

REN100376

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	27,150,471 - 27,150,717	UniSTS	GRCh37
Build 36	7	27,116,996 - 27,117,242	RGD	NCBI36
Celera	7	27,139,409 - 27,139,655	RGD
Cytogenetic Map	7	p15.2	UniSTS
HuRef	7	27,031,062 - 27,031,308	UniSTS
CRA_TCAGchr7v2	7	27,201,624 - 27,201,870	UniSTS

REN100377

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	27,150,712 - 27,150,936	UniSTS	GRCh37
Build 36	7	27,117,237 - 27,117,461	RGD	NCBI36
Celera	7	27,139,650 - 27,139,874	RGD
Cytogenetic Map	7	p15.2	UniSTS
HuRef	7	27,031,303 - 27,031,527	UniSTS
CRA_TCAGchr7v2	7	27,201,865 - 27,202,089	UniSTS

REN100378

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	27,150,915 - 27,151,156	UniSTS	GRCh37
Build 36	7	27,117,440 - 27,117,681	RGD	NCBI36
Celera	7	27,139,853 - 27,140,094	RGD
Cytogenetic Map	7	p15.2	UniSTS
HuRef	7	27,031,506 - 27,031,747	UniSTS
CRA_TCAGchr7v2	7	27,202,068 - 27,202,309	UniSTS

REN100379

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	27,151,119 - 27,151,345	UniSTS	GRCh37
Build 36	7	27,117,644 - 27,117,870	RGD	NCBI36
Celera	7	27,140,057 - 27,140,283	RGD
Cytogenetic Map	7	p15.2	UniSTS
HuRef	7	27,031,710 - 27,031,936	UniSTS
CRA_TCAGchr7v2	7	27,202,272 - 27,202,498	UniSTS

REN100380

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	27,151,322 - 27,151,572	UniSTS	GRCh37
Build 36	7	27,117,847 - 27,118,097	RGD	NCBI36
Celera	7	27,140,260 - 27,140,510	RGD
Cytogenetic Map	7	p15.2	UniSTS
HuRef	7	27,031,913 - 27,032,163	UniSTS
CRA_TCAGchr7v2	7	27,202,475 - 27,202,725	UniSTS

REN100385

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	27,152,494 - 27,152,744	UniSTS	GRCh37
Build 36	7	27,119,019 - 27,119,269	RGD	NCBI36
Celera	7	27,141,432 - 27,141,682	RGD
Cytogenetic Map	7	p15.2	UniSTS
HuRef	7	27,033,085 - 27,033,335	UniSTS
CRA_TCAGchr7v2	7	27,203,647 - 27,203,897	UniSTS

REN100386

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	27,152,731 - 27,152,957	UniSTS	GRCh37
Build 36	7	27,119,256 - 27,119,482	RGD	NCBI36
Celera	7	27,141,669 - 27,141,895	RGD
Cytogenetic Map	7	p15.2	UniSTS
HuRef	7	27,033,322 - 27,033,548	UniSTS
CRA_TCAGchr7v2	7	27,203,884 - 27,204,110	UniSTS

REN100387

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	27,152,947 - 27,153,201	UniSTS	GRCh37
Build 36	7	27,119,472 - 27,119,726	RGD	NCBI36
Celera	7	27,141,885 - 27,142,139	RGD
Cytogenetic Map	7	p15.2	UniSTS
HuRef	7	27,033,538 - 27,033,792	UniSTS
CRA_TCAGchr7v2	7	27,204,100 - 27,204,354	UniSTS

REN100388

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	27,153,136 - 27,153,371	UniSTS	GRCh37
Build 36	7	27,119,661 - 27,119,896	RGD	NCBI36
Celera	7	27,142,074 - 27,142,309	RGD
Cytogenetic Map	7	p15.2	UniSTS
HuRef	7	27,033,727 - 27,033,962	UniSTS
CRA_TCAGchr7v2	7	27,204,289 - 27,204,524	UniSTS

REN100389

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	27,153,353 - 27,153,616	UniSTS	GRCh37
Build 36	7	27,119,878 - 27,120,141	RGD	NCBI36
Celera	7	27,142,291 - 27,142,554	RGD
Cytogenetic Map	7	p15.2	UniSTS
CRA_TCAGchr7v2	7	27,204,506 - 27,204,769	UniSTS

REN100390

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	27,153,621 - 27,153,869	UniSTS	GRCh37
Build 36	7	27,120,146 - 27,120,394	RGD	NCBI36
Celera	7	27,142,559 - 27,142,807	RGD
Cytogenetic Map	7	p15.2	UniSTS
CRA_TCAGchr7v2	7	27,204,774 - 27,205,022	UniSTS

REN100391

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	27,153,868 - 27,154,120	UniSTS	GRCh37
Build 36	7	27,120,393 - 27,120,645	RGD	NCBI36
Celera	7	27,142,806 - 27,143,058	RGD
Cytogenetic Map	7	p15.2	UniSTS
HuRef	7	27,034,605 - 27,034,857	UniSTS
CRA_TCAGchr7v2	7	27,205,021 - 27,205,273	UniSTS

REN100392

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	27,154,119 - 27,154,367	UniSTS	GRCh37
Build 36	7	27,120,644 - 27,120,892	RGD	NCBI36
Celera	7	27,143,057 - 27,143,305	RGD
Cytogenetic Map	7	p15.2	UniSTS
HuRef	7	27,034,856 - 27,035,104	UniSTS
CRA_TCAGchr7v2	7	27,205,272 - 27,205,520	UniSTS

REN100393

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	27,154,344 - 27,154,601	UniSTS	GRCh37
Build 36	7	27,120,869 - 27,121,126	RGD	NCBI36
Celera	7	27,143,282 - 27,143,539	RGD
Cytogenetic Map	7	p15.2	UniSTS
HuRef	7	27,035,081 - 27,035,377	UniSTS
CRA_TCAGchr7v2	7	27,205,497 - 27,205,754	UniSTS

REN100394

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	27,154,583 - 27,154,824	UniSTS	GRCh37
Build 36	7	27,121,108 - 27,121,349	RGD	NCBI36
Celera	7	27,143,521 - 27,143,762	RGD
Cytogenetic Map	7	p15.2	UniSTS
HuRef	7	27,035,359 - 27,035,602	UniSTS
CRA_TCAGchr7v2	7	27,205,736 - 27,205,979	UniSTS

REN100395

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	27,154,804 - 27,155,062	UniSTS	GRCh37
Build 36	7	27,121,329 - 27,121,587	RGD	NCBI36
Celera	7	27,143,742 - 27,144,000	RGD
Cytogenetic Map	7	p15.2	UniSTS
HuRef	7	27,035,582 - 27,035,840	UniSTS
CRA_TCAGchr7v2	7	27,205,959 - 27,206,217	UniSTS

REN100396

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	27,155,037 - 27,155,286	UniSTS	GRCh37
Build 36	7	27,121,562 - 27,121,811	RGD	NCBI36
Celera	7	27,143,975 - 27,144,224	RGD
Cytogenetic Map	7	p15.2	UniSTS
HuRef	7	27,035,815 - 27,036,064	UniSTS
CRA_TCAGchr7v2	7	27,206,192 - 27,206,441	UniSTS

REN100397

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	27,155,263 - 27,155,529	UniSTS	GRCh37
Build 36	7	27,121,788 - 27,122,054	RGD	NCBI36
Celera	7	27,144,201 - 27,144,467	RGD
Cytogenetic Map	7	p15.2	UniSTS
HuRef	7	27,036,041 - 27,036,307	UniSTS
CRA_TCAGchr7v2	7	27,206,418 - 27,206,684	UniSTS

REN100402

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	27,156,423 - 27,156,674	UniSTS	GRCh37
Build 36	7	27,122,948 - 27,123,199	RGD	NCBI36
Celera	7	27,145,361 - 27,145,612	RGD
Cytogenetic Map	7	p15.2	UniSTS
HuRef	7	27,037,201 - 27,037,452	UniSTS
CRA_TCAGchr7v2	7	27,207,578 - 27,207,829	UniSTS

REN100403

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	27,156,673 - 27,156,933	UniSTS	GRCh37
Build 36	7	27,123,198 - 27,123,458	RGD	NCBI36
Celera	7	27,145,611 - 27,145,871	RGD
Cytogenetic Map	7	p15.2	UniSTS
HuRef	7	27,037,451 - 27,037,711	UniSTS
CRA_TCAGchr7v2	7	27,207,828 - 27,208,088	UniSTS

REN100404

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	27,156,905 - 27,157,169	UniSTS	GRCh37
Build 36	7	27,123,430 - 27,123,694	RGD	NCBI36
Celera	7	27,145,843 - 27,146,107	RGD
Cytogenetic Map	7	p15.2	UniSTS
CRA_TCAGchr7v2	7	27,208,060 - 27,208,324	UniSTS

REN100405

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	27,157,163 - 27,157,415	UniSTS	GRCh37
Build 36	7	27,123,688 - 27,123,940	RGD	NCBI36
Celera	7	27,146,101 - 27,146,353	RGD
Cytogenetic Map	7	p15.2	UniSTS
CRA_TCAGchr7v2	7	27,208,318 - 27,208,570	UniSTS

REN100406

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	27,157,392 - 27,157,644	UniSTS	GRCh37
Build 36	7	27,123,917 - 27,124,169	RGD	NCBI36
Celera	7	27,146,330 - 27,146,582	RGD
Cytogenetic Map	7	p15.2	UniSTS
HuRef	7	27,037,965 - 27,038,217	UniSTS
CRA_TCAGchr7v2	7	27,208,547 - 27,208,799	UniSTS

REN100407

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	27,157,613 - 27,157,854	UniSTS	GRCh37
Build 36	7	27,124,138 - 27,124,379	RGD	NCBI36
Celera	7	27,146,551 - 27,146,792	RGD
Cytogenetic Map	7	p15.2	UniSTS
HuRef	7	27,038,186 - 27,038,427	UniSTS
CRA_TCAGchr7v2	7	27,208,768 - 27,209,009	UniSTS

REN100408

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	27,157,830 - 27,158,084	UniSTS	GRCh37
Build 36	7	27,124,355 - 27,124,609	RGD	NCBI36
Celera	7	27,146,768 - 27,147,022	RGD
Cytogenetic Map	7	p15.2	UniSTS
HuRef	7	27,038,403 - 27,038,657	UniSTS
CRA_TCAGchr7v2	7	27,208,985 - 27,209,239	UniSTS

REN100409

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	27,158,061 - 27,158,321	UniSTS	GRCh37
Build 36	7	27,124,586 - 27,124,846	RGD	NCBI36
Celera	7	27,146,999 - 27,147,259	RGD
Cytogenetic Map	7	p15.2	UniSTS
HuRef	7	27,038,634 - 27,038,894	UniSTS
CRA_TCAGchr7v2	7	27,209,216 - 27,209,476	UniSTS

REN100410

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	27,158,288 - 27,158,544	UniSTS	GRCh37
Build 36	7	27,124,813 - 27,125,069	RGD	NCBI36
Celera	7	27,147,226 - 27,147,482	RGD
Cytogenetic Map	7	p15.2	UniSTS
HuRef	7	27,038,861 - 27,039,117	UniSTS
CRA_TCAGchr7v2	7	27,209,443 - 27,209,699	UniSTS

REN100411

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	27,158,529 - 27,158,769	UniSTS	GRCh37
Build 36	7	27,125,054 - 27,125,294	RGD	NCBI36
Celera	7	27,147,467 - 27,147,707	RGD
Cytogenetic Map	7	p15.2	UniSTS
HuRef	7	27,039,102 - 27,039,342	UniSTS
CRA_TCAGchr7v2	7	27,209,684 - 27,209,924	UniSTS

REN100412

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	27,158,682 - 27,158,916	UniSTS	GRCh37
Build 36	7	27,125,207 - 27,125,441	RGD	NCBI36
Celera	7	27,147,620 - 27,147,854	RGD
Cytogenetic Map	7	p15.2	UniSTS
HuRef	7	27,039,255 - 27,039,489	UniSTS
CRA_TCAGchr7v2	7	27,209,837 - 27,210,071	UniSTS

REN100413

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	27,158,901 - 27,159,148	UniSTS	GRCh37
Build 36	7	27,125,426 - 27,125,673	RGD	NCBI36
Celera	7	27,147,839 - 27,148,086	RGD
Cytogenetic Map	7	p15.2	UniSTS
HuRef	7	27,039,474 - 27,039,721	UniSTS
CRA_TCAGchr7v2	7	27,210,056 - 27,210,303	UniSTS

REN100414

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	27,159,125 - 27,159,377	UniSTS	GRCh37
Build 36	7	27,125,650 - 27,125,902	RGD	NCBI36
Celera	7	27,148,063 - 27,148,315	RGD
Cytogenetic Map	7	p15.2	UniSTS
HuRef	7	27,039,698 - 27,039,950	UniSTS
CRA_TCAGchr7v2	7	27,210,280 - 27,210,532	UniSTS

REN100419

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	27,160,199 - 27,160,445	UniSTS	GRCh37
Build 36	7	27,126,724 - 27,126,970	RGD	NCBI36
Celera	7	27,149,137 - 27,149,383	RGD
Cytogenetic Map	7	p15.2	UniSTS
HuRef	7	27,040,772 - 27,041,018	UniSTS
CRA_TCAGchr7v2	7	27,211,354 - 27,211,600	UniSTS

REN100420

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	27,160,444 - 27,160,668	UniSTS	GRCh37
Build 36	7	27,126,969 - 27,127,193	RGD	NCBI36
Celera	7	27,149,382 - 27,149,606	RGD
Cytogenetic Map	7	p15.2	UniSTS
HuRef	7	27,041,017 - 27,041,241	UniSTS
CRA_TCAGchr7v2	7	27,211,599 - 27,211,823	UniSTS

REN100421

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	27,160,609 - 27,160,836	UniSTS	GRCh37
Build 36	7	27,127,134 - 27,127,361	RGD	NCBI36
Celera	7	27,149,547 - 27,149,774	RGD
Cytogenetic Map	7	p15.2	UniSTS
HuRef	7	27,041,182 - 27,041,409	UniSTS
CRA_TCAGchr7v2	7	27,211,764 - 27,211,991	UniSTS

REN100422

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	27,160,801 - 27,161,052	UniSTS	GRCh37
Build 36	7	27,127,326 - 27,127,577	RGD	NCBI36
Celera	7	27,149,739 - 27,149,989	RGD
Cytogenetic Map	7	p15.2	UniSTS
HuRef	7	27,041,374 - 27,041,623	UniSTS
CRA_TCAGchr7v2	7	27,211,956 - 27,212,207	UniSTS

REN100423

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	27,161,030 - 27,161,281	UniSTS	GRCh37
Build 36	7	27,127,555 - 27,127,806	RGD	NCBI36
Celera	7	27,149,967 - 27,150,218	RGD
Cytogenetic Map	7	p15.2	UniSTS
HuRef	7	27,041,601 - 27,041,852	UniSTS
CRA_TCAGchr7v2	7	27,212,185 - 27,212,436	UniSTS

REN100424

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	27,161,274 - 27,161,539	UniSTS	GRCh37
Build 36	7	27,127,799 - 27,128,064	RGD	NCBI36
Celera	7	27,150,211 - 27,150,476	RGD
Cytogenetic Map	7	p15.2	UniSTS
HuRef	7	27,041,845 - 27,042,110	UniSTS
CRA_TCAGchr7v2	7	27,212,429 - 27,212,694	UniSTS

REN100425

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	27,161,508 - 27,161,737	UniSTS	GRCh37
Build 36	7	27,128,033 - 27,128,262	RGD	NCBI36
Celera	7	27,150,445 - 27,150,674	RGD
Cytogenetic Map	7	p15.2	UniSTS
HuRef	7	27,042,079 - 27,042,308	UniSTS
CRA_TCAGchr7v2	7	27,212,663 - 27,212,892	UniSTS

REN100426

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	27,161,711 - 27,161,935	UniSTS	GRCh37
Build 36	7	27,128,236 - 27,128,460	RGD	NCBI36
Celera	7	27,150,648 - 27,150,872	RGD
Cytogenetic Map	7	p15.2	UniSTS
HuRef	7	27,042,282 - 27,042,506	UniSTS
CRA_TCAGchr7v2	7	27,212,866 - 27,213,090	UniSTS

REN100427

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	27,161,911 - 27,162,177	UniSTS	GRCh37
Build 36	7	27,128,436 - 27,128,702	RGD	NCBI36
Celera	7	27,150,848 - 27,151,114	RGD
Cytogenetic Map	7	p15.2	UniSTS
HuRef	7	27,042,482 - 27,042,748	UniSTS
CRA_TCAGchr7v2	7	27,213,066 - 27,213,332	UniSTS

REN100428

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	27,162,166 - 27,162,395	UniSTS	GRCh37
Build 36	7	27,128,691 - 27,128,920	RGD	NCBI36
Celera	7	27,151,103 - 27,151,332	RGD
Cytogenetic Map	7	p15.2	UniSTS
HuRef	7	27,042,737 - 27,042,966	UniSTS
CRA_TCAGchr7v2	7	27,213,321 - 27,213,550	UniSTS

REN100429

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	27,162,374 - 27,162,599	UniSTS	GRCh37
Build 36	7	27,128,899 - 27,129,124	RGD	NCBI36
Celera	7	27,151,311 - 27,151,536	RGD
Cytogenetic Map	7	p15.2	UniSTS
HuRef	7	27,042,945 - 27,043,170	UniSTS
CRA_TCAGchr7v2	7	27,213,529 - 27,213,754	UniSTS

REN100430

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	27,162,581 - 27,162,828	UniSTS	GRCh37
Build 36	7	27,129,106 - 27,129,353	RGD	NCBI36
Celera	7	27,151,518 - 27,151,765	RGD
Cytogenetic Map	7	p15.2	UniSTS
HuRef	7	27,043,152 - 27,043,399	UniSTS
CRA_TCAGchr7v2	7	27,213,736 - 27,213,983	UniSTS

REN100433

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	27,163,322 - 27,163,546	UniSTS	GRCh37
Build 36	7	27,129,847 - 27,130,071	RGD	NCBI36
Celera	7	27,152,259 - 27,152,483	RGD
Cytogenetic Map	7	p15.2	UniSTS
HuRef	7	27,043,893 - 27,044,117	UniSTS
CRA_TCAGchr7v2	7	27,214,477 - 27,214,701	UniSTS

REN100434

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	27,163,502 - 27,163,745	UniSTS	GRCh37
Build 36	7	27,130,027 - 27,130,270	RGD	NCBI36
Celera	7	27,152,439 - 27,152,682	RGD
Cytogenetic Map	7	p15.2	UniSTS
HuRef	7	27,044,073 - 27,044,316	UniSTS
CRA_TCAGchr7v2	7	27,214,657 - 27,214,900	UniSTS

REN100435

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	27,163,729 - 27,163,983	UniSTS	GRCh37
Build 36	7	27,130,254 - 27,130,508	RGD	NCBI36
Celera	7	27,152,666 - 27,152,920	RGD
Cytogenetic Map	7	p15.2	UniSTS
HuRef	7	27,044,300 - 27,044,554	UniSTS
CRA_TCAGchr7v2	7	27,214,884 - 27,215,138	UniSTS

REN100436

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	27,163,959 - 27,164,208	UniSTS	GRCh37
Build 36	7	27,130,484 - 27,130,733	RGD	NCBI36
Celera	7	27,152,896 - 27,153,145	RGD
Cytogenetic Map	7	p15.2	UniSTS
HuRef	7	27,044,530 - 27,044,779	UniSTS
CRA_TCAGchr7v2	7	27,215,114 - 27,215,363	UniSTS

REN100453

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	27,167,895 - 27,168,131	UniSTS	GRCh37
Build 36	7	27,134,420 - 27,134,656	RGD	NCBI36
Celera	7	27,156,833 - 27,157,069	RGD
Cytogenetic Map	7	p15.2	UniSTS
HuRef	7	27,048,465 - 27,048,701	UniSTS
CRA_TCAGchr7v2	7	27,219,050 - 27,219,286	UniSTS

REN100454

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	7	27,168,078 - 27,168,343	UniSTS	GRCh37
Build 36	7	27,134,603 - 27,134,868	RGD	NCBI36
Celera	7	27,157,016 - 27,157,281	RGD
Cytogenetic Map	7	p15.2	UniSTS
HuRef	7	27,048,648 - 27,048,913	UniSTS
CRA_TCAGchr7v2	7	27,219,233 - 27,219,498	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system

circulatory system

endocrine system

exocrine system

hemolymphoid system

hepatobiliary system

integumental system

musculoskeletal system

nervous system

renal system

reproductive system

respiratory system

sensory system

adipose tissue

appendage

entire extraembryonic component

High

Medium

272

114

223

159

106

Low

2115

1214

1086

149

609

153

3494

1021

832

298

1170

1385

1198

2208

Below cutoff

1601

557

453

935

305

690

905

1415

101

148

580

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NR_122069	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC004079	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC004080	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC010990	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK056230	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK311383	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC035889	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BE873349	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BG248392	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CP068271	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	HG975401	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	HY010098	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENST00000517550

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	7	27,121,917 - 27,128,760 (+)	Ensembl

RefSeq Acc Id:

ENST00000517635

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	7	27,115,348 - 27,123,377 (+)	Ensembl

RefSeq Acc Id:

ENST00000517641

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	7	27,122,443 - 27,123,818 (+)	Ensembl

RefSeq Acc Id:

ENST00000518046

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	7	27,115,405 - 27,122,173 (+)	Ensembl

RefSeq Acc Id:

ENST00000518088

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	7	27,107,777 - 27,122,173 (+)	Ensembl

RefSeq Acc Id:

ENST00000521159

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	7	27,122,548 - 27,134,302 (+)	Ensembl

RefSeq Acc Id:

ENST00000521687

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	7	27,122,576 - 27,128,693 (+)	Ensembl

RefSeq Acc Id:

ENST00000522193

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	7	27,113,936 - 27,122,199 (+)	Ensembl

RefSeq Acc Id:

ENST00000523364

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	7	27,120,937 - 27,122,650 (+)	Ensembl

RefSeq Acc Id:

ENST00000524048

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	7	27,123,168 - 27,124,267 (+)	Ensembl

RefSeq Acc Id:

ENST00000593438

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	7	27,116,036 - 27,116,664 (+)	Ensembl

RefSeq Acc Id:

ENST00000658768

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	7	27,108,005 - 27,122,879 (+)	Ensembl

RefSeq Acc Id:

ENST00000669815

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	7	27,108,005 - 27,122,887 (+)	Ensembl

RefSeq Acc Id:

NR_122069

RefSeq Status:

REVIEWED

Type:

NON-CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	7	27,121,919 - 27,128,760 (+)	NCBI
CHM1_1	7	27,161,247 - 27,168,090 (+)	NCBI
T2T-CHM13v2.0	7	27,257,897 - 27,264,741 (+)	NCBI

Sequence:

show sequence

GAAAAGGAAACGCCAAGACATAGAAAACCACGCTTTTCCCGTAGGAAGAACCGATGATGAGCCC
TGATGAAAGAAGGAAGAAGACCCGCTGTCTGCGAAGGCCTAAAGGCCGCGGTTGCCAGGAACCG
TGGAGGGCCAACTCCTCCCAACCGCCCTGGTGCAAAGTCCCACGCGGCGAAGAGTTTTGGAGCA
GCGCTTACCTAGAAAGATGTTTAAATTCTGAACCAGGAATTGTCTCCAACTCCAGGCGCTCAGG
GAATCGCCTTTTCCGGTGTCCAGGCGCTCTGCAGACAAATAAACAGCAGAAGCAAATGGTCACC
GAGCCGGCAGTCAGCTTTCTGGGAGTGGGAGATGATGGGGAAAGAGGAAAGAATCGTCCGCTCG
CCGGACCCTGGCTTGGAGAAGTTCTGCGCTCCGCTGGGACTCTGCGGGCCCTTTGCGTCTACAG
ACCTATCCCTGCCCCGACTACCCCTTCACTCAGACCCAGGGAAGGACACGTTTCTATGCCTTAC
AGAGACTTGAAGCCTGAAAGCCTGGCCAAGTTTGGGAAGAAGAGGAGCCCTCTCAGAGCTCAAG
AGCCTTCCTACTCTTTGGAACTTTTCCACAGTAGGCCAAGCTTGACAAGAGTTCAGCTCAAGTT
GAACATACATACACACACTCTCACACACAAATTATGTGAGCCGTCAGAATCCAAGTGAATCCAG
CTCAAGCTATCTACAAGGTTTTTACATGCAAGGTCAAGTATCTCAATCCAGAGGACTTTTGTTT
TCTTAATGAAAAGCTTAGAAAACACATGAATCTTAGATTTTTAATGTTTTTTAAATGGAGTTTA
TTCTTAGCACATGGCTTTCTATGTAGCCACATCACAATTTGTACAGTTCCACATAAGTCTAAAT
GCACTCCCCTCTCCCCAAAGACCGTGCCCCAGAAGGGGACAACAGTATCTCTGTAACAGTGTCT
TAAATAAATGCAAGTAAGAAAAACTAACATGTCACACCTACCATCAAGGTCTACACATCTTAAG
AATTAAATAATCTTGTGAGGTCCA

hide sequence

Promoters

RGD ID:

15096123

Promoter ID:

EPDNEWNC_H945

Type:

initiation region

Name:

HOXA-AS2_1

Description:

HOXA cluster antisense RNA 2 [Source:HGNCSymbol;Acc:HGNC:43745]

SO ACC ID:

SO:0000170

Source:

EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.; Paired-end sequencing.

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	7	27,113,951 - 27,114,011	EPDNEWNC

RGD ID:

15096102

Promoter ID:

EPDNEWNC_H946

Type:

initiation region

Name:

HOXA-AS2_2

Description:

HOXA cluster antisense RNA 2 [Source:HGNCSymbol;Acc:HGNC:43745]

SO ACC ID:

SO:0000170

Source:

EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.; Paired-end sequencing.

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	7	27,115,455 - 27,115,515	EPDNEWNC

RGD ID:

15096103

Promoter ID:

EPDNEWNC_H947

Type:

initiation region

Name:

HOXA-AS2_4

Description:

HOXA cluster antisense RNA 2 [Source:HGNCSymbol;Acc:HGNC:43745]

SO ACC ID:

SO:0000170

Source:

EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.; Paired-end sequencing.

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	7	27,122,545 - 27,122,605	EPDNEWNC

Additional Information

External Database Links

Database	Acc Id	Source(s)
COSMIC	HOXA-AS2	COSMIC
Ensembl Genes	ENSG00000253552	Ensembl
GTEx	ENSG00000253552	GTEx
HGNC ID	HGNC:43745	ENTREZGENE
Human Proteome Map	HOXA-AS2	Human Proteome Map
NCBI Gene	HOXA-AS2	ENTREZGENE
OMIM	616068	OMIM
RNAcentral	URS000075A2B6	RNACentral

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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