DUX4L27 (double homeobox 4 like 27 (pseudogene)) - Rat Genome Database

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Gene: DUX4L27 (double homeobox 4 like 27 (pseudogene)) Homo sapiens
Analyze
Symbol: DUX4L27
Name: double homeobox 4 like 27 (pseudogene)
RGD ID: 8663185
HGNC Page HGNC:50808
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: double homeobox 4 like 27
Related Functional Gene: DUX4  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381234,208,423 - 34,209,801 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1234,208,415 - 34,209,675 (-)EnsemblGRCh38hg38GRCh38
GRCh371234,361,358 - 34,362,736 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361234,251,685 - 34,253,879 (-)NCBINCBI36Build 36hg18NCBI36
Celera1214,169,848 - 14,171,226 (-)NCBICelera
Cytogenetic Map12p11.1NCBI
HuRef1234,101,974 - 34,103,352 (-)NCBIHuRef
CHM1_11234,326,289 - 34,327,667 (-)NCBICHM1_1
T2T-CHM13v2.01234,086,057 - 34,087,435 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in DUX4L27
1 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:179
Count of miRNA genes:171
Interacting mature miRNAs:178
Transcripts:ENST00000554796
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 2 11 2
Low 144 191 958 67 484 39 96 105 822 133 873 864 30 259 31 2
Below cutoff 1799 1821 677 474 683 362 2233 1398 2203 211 426 566 115 806 1406

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000554796
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1234,208,415 - 34,209,675 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC DUX4L27 COSMIC
Ensembl Genes ENSG00000258794 Ensembl, ENTREZGENE
GTEx ENSG00000258794 GTEx
HGNC ID HGNC:50808 ENTREZGENE
Human Proteome Map DUX4L27 Human Proteome Map
NCBI Gene DUX4L27 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-10-30 DUX4L27  double homeobox 4 like 27 (pseudogene)    double homeobox 4 like 27  Symbol and/or name change 5135510 APPROVED