LINC01441 (long intergenic non-protein coding RNA 1441) - Rat Genome Database

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Gene: LINC01441 (long intergenic non-protein coding RNA 1441) Homo sapiens
Analyze
Symbol: LINC01441
Name: long intergenic non-protein coding RNA 1441
RGD ID: 8662798
HGNC Page HGNC:50763
Description: INTERACTS WITH arsenite(3-); rotenone
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382055,420,336 - 55,427,197 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2055,420,336 - 55,427,197 (-)EnsemblGRCh38hg38GRCh38
GRCh372054,036,874 - 54,043,735 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map20q13.2NCBI
HuRef2050,783,341 - 50,790,202 (-)NCBIHuRef
CHM1_12053,941,293 - 53,948,154 (-)NCBICHM1_1
T2T-CHM13v2.02057,195,376 - 57,202,237 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
arsenite(3-)  (EXP)
rotenone  (EXP)

References
Additional References at PubMed
PMID:14702039  


Genomics


Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 20p13-q13.33(chr20:99557-64277321)x3 copy number gain See cases [RCV000135859] Chr20:99557..64277321 [GRCh38]
Chr20:80198..62908674 [GRCh37]
Chr20:28198..62379118 [NCBI36]
Chr20:20p13-q13.33		 pathogenic
GRCh38/hg38 20q13.2(chr20:54402662-55795897)x1 copy number loss See cases [RCV000135673] Chr20:54402662..55795897 [GRCh38]
Chr20:53019201..54370953 [GRCh37]
Chr20:52452608..53804360 [NCBI36]
Chr20:20q13.2		 uncertain significance
GRCh38/hg38 20q13.2-13.32(chr20:54594888-58190583)x1 copy number loss See cases [RCV000141033] Chr20:54594888..58190583 [GRCh38]
Chr20:53211427..56765639 [GRCh37]
Chr20:52644834..56199045 [NCBI36]
Chr20:20q13.2-13.32		 pathogenic
GRCh38/hg38 20q13.2-13.33(chr20:53236165-64284202)x3 copy number gain See cases [RCV000143584] Chr20:53236165..64284202 [GRCh38]
Chr20:51852704..62915555 [GRCh37]
Chr20:51286111..62385999 [NCBI36]
Chr20:20q13.2-13.33		 likely pathogenic
GRCh38/hg38 20q13.12-13.33(chr20:44787704-64277321)x3 copy number gain See cases [RCV000053035] Chr20:44787704..64277321 [GRCh38]
Chr20:43416345..62908674 [GRCh37]
Chr20:42849759..62379118 [NCBI36]
Chr20:20q13.12-13.33		 pathogenic
GRCh38/hg38 20q13.13-13.2(chr20:49947237-55875406)x3 copy number gain See cases [RCV000053037] Chr20:49947237..55875406 [GRCh38]
Chr20:48563774..54450462 [GRCh37]
Chr20:47997181..53883869 [NCBI36]
Chr20:20q13.13-13.2		 pathogenic
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:75
Count of miRNA genes:75
Interacting mature miRNAs:75
Transcripts:ENST00000433766
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 1 3 13 3 4 1 188 3
Below cutoff 245 149 208 63 269 51 479 134 737 126 424 389 24 82 166 3

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000433766
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2055,420,336 - 55,427,197 (-)Ensembl
RefSeq Acc Id: NR_110064
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382055,420,336 - 55,427,197 (-)NCBI
HuRef2050,783,341 - 50,790,202 (-)NCBI
CHM1_12053,941,293 - 53,948,154 (-)NCBI
T2T-CHM13v2.02057,195,376 - 57,202,237 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
COSMIC LINC01441 COSMIC
Ensembl Genes ENSG00000224008 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000433766 ENTREZGENE
GTEx ENSG00000224008 GTEx
HGNC ID HGNC:50763 ENTREZGENE
Human Proteome Map LINC01441 Human Proteome Map
NCBI Gene LINC01441 ENTREZGENE
RNAcentral URS00001669C9 RNACentral