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References
Genomics
miRNA Target Status
Predicted Targets
Summary Value | Count of predictions: | 40604 | Count of gene targets: | 16656 | Count of transcripts: | 34652 | Interacting mature miRNAs: | hsa-miR-6771-3p, hsa-miR-6771-5p | Prediction methods: | Miranda, Rnahybrid, Targetscan | Result types: | miRGate_prediction | |
The detailed report is available here: | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
Expression
RNA-SEQ Expression
High: > 1000 TPM value
Medium: Between 11 and 1000 TPMLow: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM
alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | adipose tissue | appendage | |
High | ||||||||||||||
Medium | ||||||||||||||
Low | 2 | 14 | 7 | 44 | 9 | 4 | 8 | 1 | 5 | 14 | 2 | 6 | ||
Below cutoff | 4 | 1 | 4 | 1 | 21 | 1 | 3 | 4 | 9 | 3 | 5 | 4 | 1 |
Sequence
Nucleotide Sequences
RefSeq Transcripts | NR_106829 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
GenBank Nucleotide | AC007597 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
Reference Sequences
RefSeq Acc Id: | ENST00000619793 | ||||||||
RefSeq Status: | |||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | NR_106829 | ||||||||||||||||
RefSeq Status: | PROVISIONAL | ||||||||||||||||
Type: | NON-CODING | ||||||||||||||||
Position: |
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Sequence: |
Clinical Variants
Name | Type | Condition(s) | Position(s) | Clinical significance |
GRCh38/hg38 16q11.2-12.1(chr16:46466829-52422170)x1 | copy number loss | See cases [RCV000137306] | Chr16:46466829..52422170 [GRCh38] Chr16:46500741..52456082 [GRCh37] Chr16:45058242..51013583 [NCBI36] Chr16:16q11.2-12.1 |
pathogenic |
GRCh38/hg38 16q11.2-12.1(chr16:46466829-52355793)x3 | copy number gain | See cases [RCV000137170] | Chr16:46466829..52355793 [GRCh38] Chr16:46500741..52389705 [GRCh37] Chr16:45058242..50947206 [NCBI36] Chr16:16q11.2-12.1 |
pathogenic |
GRCh38/hg38 16q12.1-12.2(chr16:49570553-53467065)x1 | copy number loss | See cases [RCV000137722] | Chr16:49570553..53467065 [GRCh38] Chr16:49604464..53500977 [GRCh37] Chr16:48161965..52058478 [NCBI36] Chr16:16q12.1-12.2 |
pathogenic |
GRCh38/hg38 16q12.1-22.1(chr16:49685521-68401712)x3 | copy number gain | See cases [RCV000143752] | Chr16:49685521..68401712 [GRCh38] Chr16:49719432..68435615 [GRCh37] Chr16:48276933..66993116 [NCBI36] Chr16:16q12.1-22.1 |
pathogenic |
GRCh38/hg38 16q11.2-12.1(chr16:46466829-52314178)x3 | copy number gain | Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052404]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052404]|See cases [RCV000052404] | Chr16:46466829..52314178 [GRCh38] Chr16:46500741..52348090 [GRCh37] Chr16:45058242..50905591 [NCBI36] Chr16:16q11.2-12.1 |
pathogenic |
GRCh38/hg38 16q11.2-12.1(chr16:46466829-51939304)x1 | copy number loss | See cases [RCV000053309] | Chr16:46466829..51939304 [GRCh38] Chr16:46500741..51973216 [GRCh37] Chr16:45058242..50530717 [NCBI36] Chr16:16q11.2-12.1 |
pathogenic |
GRCh38/hg38 16q11.2-12.1(chr16:46466829-51673196)x1 | copy number loss | See cases [RCV000053310] | Chr16:46466829..51673196 [GRCh38] Chr16:46500741..51707107 [GRCh37] Chr16:45058242..50264608 [NCBI36] Chr16:16q11.2-12.1 |
pathogenic |
GRCh38/hg38 16q11.2-12.1(chr16:46471520-52405956)x1 | copy number loss | See cases [RCV000053328] | Chr16:46471520..52405956 [GRCh38] Chr16:46505432..52439868 [GRCh37] Chr16:45062933..50997369 [NCBI36] Chr16:16q11.2-12.1 |
pathogenic |
GRCh38/hg38 16q12.1-12.2(chr16:47250644-54121476)x1 | copy number loss | See cases [RCV000053329] | Chr16:47250644..54121476 [GRCh38] Chr16:47284555..54155388 [GRCh37] Chr16:45842056..52712889 [NCBI36] Chr16:16q12.1-12.2 |
pathogenic |
GRCh38/hg38 16q12.1(chr16:48156593-52220374)x1 | copy number loss | Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053330]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053330]|See cases [RCV000053330] | Chr16:48156593..52220374 [GRCh38] Chr16:48190504..52254286 [GRCh37] Chr16:46748005..50811787 [NCBI36] Chr16:16q12.1 |
pathogenic |
GRCh38/hg38 16q12.1(chr16:49740807-51876620)x1 | copy number loss | See cases [RCV000053331] | Chr16:49740807..51876620 [GRCh38] Chr16:49774718..51910531 [GRCh37] Chr16:48332219..50468032 [NCBI36] Chr16:16q12.1 |
pathogenic |
GRCh38/hg38 16q12.1-12.2(chr16:48543083-53879916)x1 | copy number loss | Ductal breast carcinoma [RCV000207292] | Chr16:48543083..53879916 [GRCh38] Chr16:48576994..53913828 [GRCh37] Chr16:16q12.1-12.2 |
uncertain significance |
Additional Information
External Database Links
Database | Acc Id | Source(s) |
COSMIC | MIR6771 | COSMIC |
Ensembl Genes | ENSG00000274969 | Ensembl, ENTREZGENE |
Ensembl Transcript | ENST00000619793 | ENTREZGENE |
GTEx | ENSG00000274969 | GTEx |
HGNC ID | HGNC:50212 | ENTREZGENE |
Human Proteome Map | MIR6771 | Human Proteome Map |
miRBase | MI0022616 | ENTREZGENE |
NCBI Gene | MIR6771 | ENTREZGENE |
RNAcentral | URS000075ADA8 | RNACentral |
URS000075EE65 | RNACentral | |
URS000075EF6D | RNACentral |