MIR8056 (microRNA 8056) - Rat Genome Database

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Gene: MIR8056 (microRNA 8056) Homo sapiens
Analyze
Symbol: MIR8056
Name: microRNA 8056
RGD ID: 8550326
HGNC Page HGNC:49948
Description: microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: hsa-mir-8056
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385173,347,455 - 173,347,536 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5173,347,455 - 173,347,536 (+)EnsemblGRCh38hg38GRCh38
GRCh375172,774,458 - 172,774,539 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map5q35.2NCBI
HuRef5167,869,696 - 167,869,777 (+)NCBIHuRef
CHM1_15172,206,870 - 172,206,951 (+)NCBICHM1_1
T2T-CHM13v2.05173,887,517 - 173,887,598 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:16381832   PMID:23612084  


Genomics


Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 5q33.3-35.3(chr5:156825512-181269805)x3 copy number gain See cases [RCV000133847] Chr5:156825512..181269805 [GRCh38]
Chr5:156252523..180696806 [GRCh37]
Chr5:156185101..180629412 [NCBI36]
Chr5:5q33.3-35.3		 pathogenic
GRCh38/hg38 5q34-35.3(chr5:164386701-181269805)x3 copy number gain See cases [RCV000135546] Chr5:164386701..181269805 [GRCh38]
Chr5:163813707..180696806 [GRCh37]
Chr5:163746285..180629412 [NCBI36]
Chr5:5q34-35.3		 pathogenic
GRCh38/hg38 5q35.1-35.3(chr5:169334755-181285301)x3 copy number gain See cases [RCV000141249] Chr5:169334755..181285301 [GRCh38]
Chr5:168761759..180712302 [GRCh37]
Chr5:168694337..180644908 [NCBI36]
Chr5:5q35.1-35.3		 pathogenic
GRCh38/hg38 5q35.1-35.2(chr5:173237772-176614618)x3 copy number gain See cases [RCV000142647] Chr5:173237772..176614618 [GRCh38]
Chr5:172664775..176041619 [GRCh37]
Chr5:172597381..175974225 [NCBI36]
Chr5:5q35.1-35.2		 pathogenic
GRCh38/hg38 5q32-35.3(chr5:149714592-181272151)x3 copy number gain See cases [RCV000051863] Chr5:149714592..181272151 [GRCh38]
Chr5:149094155..180699152 [GRCh37]
Chr5:149074348..180631758 [NCBI36]
Chr5:5q32-35.3		 pathogenic
GRCh38/hg38 5q33.3-35.3(chr5:160029980-181269805)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051865]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051865]|See cases [RCV000051865] Chr5:160029980..181269805 [GRCh38]
Chr5:159456987..180696806 [GRCh37]
Chr5:159389565..180629412 [NCBI36]
Chr5:5q33.3-35.3		 pathogenic
GRCh38/hg38 5q34-35.3(chr5:168689326-181269946)x3 copy number gain See cases [RCV000051866] Chr5:168689326..181269946 [GRCh38]
Chr5:168116331..180696947 [GRCh37]
Chr5:168048909..180629553 [NCBI36]
Chr5:5q34-35.3		 pathogenic
GRCh38/hg38 5q35.1-35.2(chr5:172776798-174342969)x1 copy number loss See cases [RCV000052149] Chr5:172776798..174342969 [GRCh38]
Chr5:172203801..173769972 [GRCh37]
Chr5:172136407..173702578 [NCBI36]
Chr5:5q35.1-35.2		 pathogenic
GRCh38/hg38 5q35.1-35.2(chr5:172961091-175054665)x1 copy number loss See cases [RCV000052150] Chr5:172961091..175054665 [GRCh38]
Chr5:172388094..174481668 [GRCh37]
Chr5:172320700..174414274 [NCBI36]
Chr5:5q35.1-35.2		 pathogenic
miRNA Target Status

Predicted Targets
Summary Value
Count of predictions:6857
Count of gene targets:3509
Count of transcripts:5856
Interacting mature miRNAs:hsa-miR-8056
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system adipose tissue appendage
High
Medium
Low 3 8 4 5 10 1 3 2 5 6 5
Below cutoff 4 6 6 1 3 1 11 4 7 2 2 2 4 9

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000614530
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5173,347,455 - 173,347,536 (+)Ensembl
RefSeq Acc Id: NR_107023
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh385173,347,455 - 173,347,536 (+)NCBI
HuRef5167,869,696 - 167,869,777 (+)NCBI
CHM1_15172,206,870 - 172,206,951 (+)NCBI
T2T-CHM13v2.05173,887,517 - 173,887,598 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
COSMIC MIR8056 COSMIC
Ensembl Genes ENSG00000274994 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000614530 ENTREZGENE
GTEx ENSG00000274994 GTEx
HGNC ID HGNC:49948 ENTREZGENE
Human Proteome Map MIR8056 Human Proteome Map
miRBase MI0025892 ENTREZGENE
NCBI Gene MIR8056 ENTREZGENE
RNAcentral URS000075C623 RNACentral
  URS000075E059 RNACentral