MIR7156 (microRNA 7156) - Rat Genome Database
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: MIR7156 (microRNA 7156) Homo sapiens
Analyze
Symbol: MIR7156
Name: microRNA 7156
RGD ID: 8549823
HGNC Page HGNC
Description: microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
Type: ncrna
RefSeq Status: PROVISIONAL
Also known as: hsa-mir-7156
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl177,060,143 - 77,060,202 (+)EnsemblGRCh38hg38GRCh38
GRCh38177,060,143 - 77,060,202 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37177,525,828 - 77,525,887 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map1p31.1NCBI
HuRef175,656,305 - 75,656,364 (+)NCBIHuRef
CHM1_1177,641,139 - 77,641,198 (+)NCBICHM1_1
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:16381832   PMID:23034410  


Genomics

miRNA Target Status

Predicted Targets
Summary Value
Count of predictions:43347
Count of gene targets:15362
Count of transcripts:33626
Interacting mature miRNAs:hsa-miR-7156-3p, hsa-miR-7156-5p
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system appendage
High
Medium 1
Low 10 6 7 3 12 6 30 7 40 8 23 49 1 7
Below cutoff 1 1 1 5 3 5 7 3 5 10 2

Sequence

Nucleotide Sequences
RefSeq Transcripts NR_106978 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AL035409 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000620979
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl177,060,143 - 77,060,202 (+)Ensembl
RefSeq Acc Id: NR_106978
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38177,060,143 - 77,060,202 (+)NCBI
HuRef175,656,305 - 75,656,364 (+)NCBI
CHM1_1177,641,139 - 77,641,198 (+)NCBI
Sequence:

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 1p32.1-22.3(chr1:58819605-86098611)x1 copy number loss See cases [RCV000136913] Chr1:58819605..86098611 [GRCh38]
Chr1:59285277..86564294 [GRCh37]
Chr1:59057865..86336882 [NCBI36]
Chr1:1p32.1-22.3
pathogenic
GRCh38/hg38 1p31.1-22.2(chr1:76419302-88628464)x1 copy number loss See cases [RCV000138957] Chr1:76419302..88628464 [GRCh38]
Chr1:76884987..89094147 [GRCh37]
Chr1:76657575..88866735 [NCBI36]
Chr1:1p31.1-22.2
pathogenic
GRCh38/hg38 1p31.3-31.1(chr1:66865125-77123381)x1 copy number loss See cases [RCV000143129] Chr1:66865125..77123381 [GRCh38]
Chr1:67330808..77589066 [GRCh37]
Chr1:67103396..77361654 [NCBI36]
Chr1:1p31.3-31.1
pathogenic
GRCh38/hg38 1p31.1-13.3(chr1:72661709-107456880)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051825]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000051825]|See cases [RCV000051825] Chr1:72661709..107456880 [GRCh38]
Chr1:73127392..107999502 [GRCh37]
Chr1:72899980..107801025 [NCBI36]
Chr1:1p31.1-13.3
pathogenic

Additional Information

Database Acc Id Source(s)
COSMIC MIR7156 COSMIC
Ensembl Genes ENSG00000276081 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000620979 ENTREZGENE
GTEx ENSG00000276081 GTEx
HGNC ID HGNC:50023 ENTREZGENE
Human Proteome Map MIR7156 Human Proteome Map
miRBase MI0023616 ENTREZGENE
NCBI Gene MIR7156 ENTREZGENE
RNAcentral URS000075B2E1 RNACentral
  URS000075BA51 RNACentral
  URS000075C1D3 RNACentral