CDCA4P1 (cell division cycle associated 4 pseudogene 1) - Rat Genome Database

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Gene: CDCA4P1 (cell division cycle associated 4 pseudogene 1) Homo sapiens
Analyze
Symbol: CDCA4P1
Name: cell division cycle associated 4 pseudogene 1
RGD ID: 8548406
HGNC Page HGNC:49770
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: CDCA4  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38914,593,578 - 14,594,185 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl914,593,577 - 14,594,200 (+)EnsemblGRCh38hg38GRCh38
GRCh37914,593,576 - 14,594,183 (+)NCBIGRCh37GRCh37hg19GRCh37
Celera914,527,104 - 14,527,711 (+)NCBICelera
Cytogenetic Map9p22.3NCBI
HuRef914,557,054 - 14,557,661 (+)NCBIHuRef
CHM1_1914,593,624 - 14,594,231 (+)NCBICHM1_1
T2T-CHM13v2.0914,603,253 - 14,603,860 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:34
Count of miRNA genes:33
Interacting mature miRNAs:33
Transcripts:ENST00000442667
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 56 82 1
Low 1863 1306 1040 194 820 56 2871 967 1893 109 927 1193 141 806 1847 2
Below cutoff 442 988 452 228 306 205 1236 1038 1406 188 366 262 27 370 823

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000442667
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl914,593,577 - 14,594,200 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC CDCA4P1 COSMIC
Ensembl Genes ENSG00000229029 Ensembl, ENTREZGENE
GTEx ENSG00000229029 GTEx
HGNC ID HGNC:49770 ENTREZGENE
Human Proteome Map CDCA4P1 Human Proteome Map
NCBI Gene CDCA4P1 ENTREZGENE