DYNLL1P4 (dynein light chain LC8-type 1 pseudogene 4) - Rat Genome Database

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Gene: DYNLL1P4 (dynein light chain LC8-type 1 pseudogene 4) Homo sapiens
Analyze
Symbol: DYNLL1P4
Name: dynein light chain LC8-type 1 pseudogene 4
RGD ID: 8157851
HGNC Page HGNC:49655
Description: INTERACTS WITH DDT
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: DYNLL1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812113,789,340 - 113,789,825 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12113,789,542 - 113,789,807 (-)EnsemblGRCh38hg38GRCh38
GRCh3712114,227,145 - 114,227,630 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3612112,711,727 - 112,711,995 (-)NCBINCBI36Build 36hg18NCBI36
Celera12113,854,145 - 113,854,413 (-)NCBICelera
Cytogenetic Map12q24.13NCBI
HuRef12111,237,373 - 111,237,638 (-)NCBIHuRef
CHM1_112114,195,589 - 114,195,854 (-)NCBICHM1_1
T2T-CHM13v2.012113,765,177 - 113,765,662 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
DDT  (EXP)

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:110
Count of miRNA genes:110
Interacting mature miRNAs:110
Transcripts:ENST00000549314
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 1 1 1 3
Low 1174 716 467 110 569 72 1544 693 1856 91 832 493 42 478 953
Below cutoff 845 1314 666 247 543 169 1720 891 1430 159 404 619 81 513 1089 3

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000549314
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl12113,789,542 - 113,789,807 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC DYNLL1P4 COSMIC
Ensembl Genes ENSG00000257231 Ensembl
GTEx ENSG00000257231 GTEx
HGNC ID HGNC:49655 ENTREZGENE
Human Proteome Map DYNLL1P4 Human Proteome Map
NCBI Gene DYNLL1P4 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-07 DYNLL1P4  dynein light chain LC8-type 1 pseudogene 4    dynein, light chain, LC8-type 1 pseudogene 4  Symbol and/or name change 5135510 APPROVED