Gene: LOC102551333 (uncharacterized LOC102551333) Rattus norvegicus |
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Analyze |
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Symbol: |
LOC102551333 |
Name: |
uncharacterized LOC102551333 |
RGD ID: |
7737437 |
Description: |
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Type: |
ncrna
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RefSeq Status: |
MODEL |
Latest Assembly: |
mRatBN7.2 - mRatBN7.2 Assembly |
Position: |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 12 | 48,915,851 - 48,932,814 (+) | NCBI | | GRCr8 | | | mRatBN7.2 | 12 | 43,255,624 - 43,267,196 (+) | NCBI | mRatBN7.2 | mRatBN7.2 | | | Rnor_6.0 | 12 | 49,048,596 - 49,074,222 (+) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_5.0 | 12 | 50,825,255 - 50,829,150 (+) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | Celera | 12 | 44,853,258 - 44,877,478 (+) | NCBI | | Celera | | | Cytogenetic Map | 12 | q16 | NCBI | | | | |
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JBrowse: |
View Region in Genome Browser (JBrowse)
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Model |
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References
Genomics
QTLs in Region (mRatBN7.2)
737979 | Pia22 | Pristane induced arthritis QTL 22 | 53.1 | | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 12 | 1 | 44465750 | Rat | 634351 | Apr5 | Acute phase response QTL 5 | 6.7 | | blood interleukin-6 amount (VT:0008595) | plasma interleukin-6 level (CMO:0001927) | 12 | 1 | 44503507 | Rat | 2302042 | Pia38 | Pristane induced arthritis QTL 38 | 3.5 | 0.001 | blood immunoglobulin amount (VT:0002460) | serum immunoglobulin G1 level (CMO:0002115) | 12 | 1 | 44503507 | Rat | 634350 | Apr4 | Acute phase response QTL 4 | 6 | | orosomucoid 1 amount (VT:0010541) | plasma orosomucoid 1 level (CMO:0001467) | 12 | 1172005 | 46172005 | Rat | 8552918 | Pigfal7 | Plasma insulin-like growth factor 1 level QTL 7 | | | blood insulin-like growth factor amount (VT:0010479) | plasma insulin-like growth factor 1 level (CMO:0001299) | 12 | 5564495 | 46669029 | Rat | 7411547 | Bw129 | Body weight QTL 129 | | 0.001 | body mass (VT:0001259) | body weight gain (CMO:0000420) | 6 | 5564495 | 46669029 | Rat | 7411597 | Foco10 | Food consumption QTL 10 | | 0.001 | eating behavior trait (VT:0001431) | feed conversion ratio (CMO:0001312) | 12 | 5564495 | 46669029 | Rat | 7411641 | Foco19 | Food consumption QTL 19 | 27.7 | 0.001 | eating behavior trait (VT:0001431) | feed conversion ratio (CMO:0001312) | 12 | 5564495 | 46669029 | Rat | 8552964 | Pigfal17 | Plasma insulin-like growth factor 1 level QTL 17 | 3.5 | | blood insulin-like growth factor amount (VT:0010479) | plasma insulin-like growth factor 1 level (CMO:0001299) | 12 | 5564495 | 46669029 | Rat | 7411588 | Foco6 | Food consumption QTL 6 | | 0.001 | eating behavior trait (VT:0001431) | feed conversion ratio (CMO:0001312) | 12 | 5564495 | 46669029 | Rat | 8552912 | Pigfal6 | Plasma insulin-like growth factor 1 level QTL 6 | 5 | | blood insulin-like growth factor amount (VT:0010479) | plasma insulin-like growth factor 1 level (CMO:0001299) | 12 | 5564498 | 46669029 | Rat | 10059594 | Kidm46 | Kidney mass QTL 46 | 3.79 | 0.025 | kidney mass (VT:0002707) | both kidneys wet weight to body weight ratio (CMO:0000340) | 12 | 6107579 | 46669029 | Rat | 1302792 | Scl21 | Serum cholesterol level QTL 21 | 3.8 | 0.0011 | blood cholesterol amount (VT:0000180) | plasma total cholesterol level (CMO:0000585) | 12 | 7196730 | 46669029 | Rat | 1549829 | Scl48 | Serum cholesterol level QTL 48 | 5 | | blood cholesterol amount (VT:0000180) | serum total cholesterol level (CMO:0000363) | 12 | 9603277 | 46669029 | Rat | 2293699 | Bss49 | Bone structure and strength QTL 49 | 5.61 | 0.0001 | lumbar vertebra size trait (VT:0010518) | lumbar vertebra trabecular cross-sectional area (CMO:0001692) | 12 | 10474137 | 46669029 | Rat | 2300186 | Bmd59 | Bone mineral density QTL 59 | 7.1 | 0.0001 | lumbar vertebra mineral mass (VT:0010511) | volumetric bone mineral density (CMO:0001553) | 12 | 10474137 | 46669029 | Rat | 1331761 | Bp218 | Blood pressure QTL 218 | 2.973 | | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 12 | 11073825 | 45055165 | Rat | 61404 | Bw120 | Body weight QTL 120 | 5.1 | | body mass (VT:0001259) | body mass index (BMI) (CMO:0000105) | 12 | 12351619 | 46669029 | Rat | 1641928 | Alcrsp5 | Alcohol response QTL 5 | | | response to alcohol trait (VT:0010489) | duration of loss of righting reflex (CMO:0002289) | 12 | 12812385 | 46669029 | Rat | 2303569 | Gluco44 | Glucose level QTL 44 | 2 | | blood glucose amount (VT:0000188) | blood glucose level (CMO:0000046) | 12 | 12812385 | 46669029 | Rat | 1549902 | Bp269 | Blood pressure QTL 269 | | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 12 | 13182736 | 46669029 | Rat | 1549912 | Bp268 | Blood pressure QTL 268 | | | arterial blood pressure trait (VT:2000000) | diastolic blood pressure (CMO:0000005) | 10 | 13182736 | 46669029 | Rat | 2302060 | Pia37 | Pristane induced arthritis QTL 37 | 6.1 | 0.001 | blood immunoglobulin amount (VT:0002460) | serum immunoglobulin G1 level (CMO:0002115) | 12 | 13198157 | 46669029 | Rat | 631560 | Apr1 | Acute phase response QTL 1 | 6.1 | | orosomucoid 1 amount (VT:0010541) | plasma orosomucoid 1 level (CMO:0001467) | 12 | 19144362 | 46669029 | Rat | 61324 | Eae5 | Experimental allergic encephalomyelitis QTL 5 | 14 | | nervous system integrity trait (VT:0010566) | percentage of study population developing relapsing-remitting experimental autoimmune encephalomyelitis during a period of time (CMO:0001402) | 12 | 19610870 | 46669029 | Rat | 7411643 | Foco20 | Food consumption QTL 20 | | 0.001 | eating behavior trait (VT:0001431) | feed conversion ratio (CMO:0001312) | 12 | 20328819 | 46669029 | Rat | 1300175 | Cm5 | Cardiac mass QTL 5 | 3.78 | | heart mass (VT:0007028) | heart left ventricle weight to body weight ratio (CMO:0000530) | 12 | 28064433 | 45899022 | Rat | 1600386 | Calcic2 | Intracellular calcium level QTL 2 | | 0.001 | platelet physiology trait (VT:0005464) | platelet intracellular calcium level (CMO:0000922) | 12 | 28064433 | 46669029 | Rat | 1300162 | Bp188 | Blood pressure QTL 188 | 3.19 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 12 | 32103174 | 45899022 | Rat | |
Expression
Sequence
RefSeq Acc Id: |
XR_005492063 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
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GRCr8 | 12 | 48,916,455 - 48,926,992 (+) | NCBI | mRatBN7.2 | 12 | 43,255,861 - 43,264,136 (+) | NCBI |
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RefSeq Acc Id: |
XR_005492067 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
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GRCr8 | 12 | 48,916,113 - 48,926,992 (+) | NCBI | mRatBN7.2 | 12 | 43,255,624 - 43,267,196 (+) | NCBI |
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RefSeq Acc Id: |
XR_005492068 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
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GRCr8 | 12 | 48,915,851 - 48,926,992 (+) | NCBI | mRatBN7.2 | 12 | 43,255,624 - 43,258,205 (+) | NCBI |
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RefSeq Acc Id: |
XR_005492069 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
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GRCr8 | 12 | 48,916,113 - 48,926,992 (+) | NCBI | mRatBN7.2 | 12 | 43,255,624 - 43,264,136 (+) | NCBI |
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RefSeq Acc Id: |
XR_010056582 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
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GRCr8 | 12 | 48,915,851 - 48,926,992 (+) | NCBI |
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RefSeq Acc Id: |
XR_010056583 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
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GRCr8 | 12 | 48,916,455 - 48,926,992 (+) | NCBI |
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RefSeq Acc Id: |
XR_010056584 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
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GRCr8 | 12 | 48,916,113 - 48,926,992 (+) | NCBI |
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RefSeq Acc Id: |
XR_010056585 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
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GRCr8 | 12 | 48,916,455 - 48,926,992 (+) | NCBI |
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RefSeq Acc Id: |
XR_010056586 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
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GRCr8 | 12 | 48,916,474 - 48,926,992 (+) | NCBI |
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RefSeq Acc Id: |
XR_010056587 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
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GRCr8 | 12 | 48,916,474 - 48,926,992 (+) | NCBI |
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RefSeq Acc Id: |
XR_010056588 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
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GRCr8 | 12 | 48,916,474 - 48,926,992 (+) | NCBI |
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RefSeq Acc Id: |
XR_010056589 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
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GRCr8 | 12 | 48,916,474 - 48,926,992 (+) | NCBI |
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RefSeq Acc Id: |
XR_010056590 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
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GRCr8 | 12 | 48,916,113 - 48,932,814 (+) | NCBI |
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RefSeq Acc Id: |
XR_010056591 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
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GRCr8 | 12 | 48,916,113 - 48,926,992 (+) | NCBI |
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RefSeq Acc Id: |
XR_010056592 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
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GRCr8 | 12 | 48,916,113 - 48,926,992 (+) | NCBI |
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RefSeq Acc Id: |
XR_595388 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
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GRCr8 | 12 | 48,916,113 - 48,930,289 (+) | NCBI | mRatBN7.2 | 12 | 43,255,624 - 43,267,196 (+) | NCBI | Rnor_6.0 | 12 | 49,048,596 - 49,064,181 (+) | NCBI |
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Sequence: |
TACCCATACCACCTGCATGGAGCTCCTTCCTGTTAGCTTTCTTACCTGTGTCCTCTAGCACCTC CCTGAGACCCCGAGCACAATCGGGGTCAAGCTCCACATTCTGTCTAAGGTTCCATGACCTGCCC CACCCCTCCTTCTGTGGGGAGATGTCAACAGTCCAAGGGCCCCACTGTGATACTCTTACGAAGG GTGGCAGCTGCTCAGAGGAATAGGCATCCCACGGACCCTCCTCACCAGCACTCGGCTTCCGGCA CTGCGCTATTCTCTGGAAAGATAACTACCCATAGTCCTCTGGTGCGTCCTGAACACTCAGTTGG AGGAAGATTCTGCCTGAGGAGGCAGTGCGAAGAGCCTGGGGTCTGATGCCCCAGTGGGCGCGCC ACGAAGCTTCACCCCATCACAAGCTCAGAACATCTTGAGCAAGTTGCCTCAGTTTCCCATCTGG AGGGTGGGTCAGCAGCCTGAAGCTTAAGTCGCAATGACCGTCAGCCAGTGAAGGTTTGCCAGGA GCCTCCTGACTGCTTCCCACACGGGCTTGAAATGGATGCTAAGGACGACAGACACCATGCTCAG CCCCAAATGGGACATCTGCATCACCCAGGAGTCACTGAACAAGAGAAGGTAGAACTTCATGGAT CGCACGGTTGTCCCCTTAGTCACCTGCCTTCACGCCCTTGACTCAGTCCCCACGCCGGGTCTCT ACTGGACATAACTACCAGGATGGGTCACTCAAGACATCATCAGAGGAGCCTCTTTGTATGGCCA ACTGGTGCAGAAGATTTCATCAGGAGACAGTGGAGCCGGGGGAGCGGAGCTGAGCAGATAGGCT ACAACAGTTGCCCATCCTGTCCCACTGTGACACAACCCAGAGGCTGGAGAATTTATGTGAAAAA CACTTACTATCTCTAGAATCTGGAACGTCTGACATCGAGGGTGCAGTGGTAACCAGTCTGGCCC AGACTATCATCCCATAGCGCCTCCAGGTGAGAGAGAGCAGGCTCACTCTACCTCACATCAACCC ACCGCCACAGCATCCCTTTGTGACAGCCGCACTGTCAGAGAGAACTCCCCGGAAACACCCCACG TCTCGGCCTAATGAGGTACTGCAAATTACAATCCCAACCCACACGCCTTGGGGAACTCCACTCA CCCACAGCCACCTCGAAGAGGCAGCCACCCTGTCAGAGCGAGCCGGGAAGCCTCCCTGTGCAAC GGTTCTAGTTTCAGACCAATGTCGGGAGCCAGCGGGTAAGTCTTACACCCAGTAGCAGAGTTCC CGGACAGGGTCCCTGGTTCCACGTCCTGCAGTAACCTGTCCCAAGAGGCATC
hide sequence
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RefSeq Acc Id: |
XR_595389 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
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GRCr8 | 12 | 48,916,113 - 48,926,992 (+) | NCBI | mRatBN7.2 | 12 | 43,255,624 - 43,264,136 (+) | NCBI | Rnor_6.0 | 12 | 49,048,596 - 49,053,022 (+) | NCBI |
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Sequence: |
TACCCATACCACCTGCATGGAGCTCCTTCCTGTTAGCTTTCTTACCTGTGTCCTCTAGCACCTC CCTGAGACCCCGAGCACAATCGGGGTCAAGCTCCACATTCTGTCTAAGGTTCCATGACCTGCCC CACCCCTCCTTCTGTGGGGAGATGTCAACAGTCCAAGGGCCCCACTGTGATACTCTTACGAAGG GTGGCAGCTGCTCAGAGGAATAGGCATCCCACGGACCCTCCTCACCAGCACTCGGCTTCCGGCA CTGCGCTATTCTCTGGAAAGATAACTACCCATAGTCCTCTGGTGCGTCCTGAACACTCAGTTGG AGGAAGATTCTGCCTGAGGAGGCAGTGCGAAGAGCCTGGGGTCTGATGCCCCAGTGGGCGCGCC ACGAAGCTTCACCCCATCACAAGCTCAGAACATCTTGAGCAAGTTGCCTCAGTTTCCCATCTGG AGGGTGGGTCAGCAGCCTGAAGCTTAAGTCGCAATGACCGTCAGCCAGTGAAGGTTTGCCAGGA GCCTCCTGACTGCTTCCCACACGGGCTTGAAATGGATGCTAAGGACGACAGACACCATGCTCAG CCCCAAATGGGACATCTGCATCACCCAGGAGTCACTGAACAAGAGAAGATGAGAGGCCCAAGCG TCGAGGAACTCAGGCCAATCCCCAGTGTAGAAAGCTGCACAGTCACGTTCAAATGCCACTCCAC CTGACTGGGAACCTGTTTCCTTCCCACCATACCTGTCAAACAAGTGGACTCACTCGGAGCTCCA GTGCTGAGAGCAGGTGGGGCCCCCTCAAGGGAGCTTCTGCTGGCTCTGGCCACAGCCCACTGGA TGGACAGATGGGTGAATGGGCAGACAGATGGACATACGGACGGACAGAGGCCAGCTGCTTCACT CTGCTCTAATCACCAGGCCCCTCGGCGGACTCGGTAAATGCCCCGCTGCTGCTGAGCCGAAGGC TTTCAGGGCCTGCCTGTCACCGTGTTTTACAGCCCTCTTGTTGAAGAGCGGAATCTGTATTGAT TTCAGAACAACTCAAGCTGTAAATTACTGGCCGCGATCGGCTTGGTAACCCTGAGATGAGAATC TATTGACTGGACCGGGGGCTTAAATCTAATTATCGTCCCAGGAAAACCATTGGCAGAGCTGCTC AATGCCTGTGCGGAAGAGAACAGTTAAACAGCCCAGGGCTACGTGGGGGGTGGGGGTGGGGCAG AGATCTAGAACGATCCGGGGTCTCTGCGGAGCCTAAGAAACTGCCTTGGCCACCAATCGATTGA CCTTGAGTCACTTCTGTAATTACCAACGGCGATGTTACTACGATAGCGTGGTGCCCCATGGCTC TGGGGCCTGGGCACCTCATGCAGCCTGTTGTTCAGCTTCCTCAAACCAGTTTCTTCATCTCTAC ATAGAGGGAGCCTTGGTGCATTTCTACCTGTACCTCAGGAAGGAGAGAAAACCGCCAGCCATGG GAGCGGCTTCGCCCAAGGGCACACAGCTACCTCGGAATGCAGACCTTAAACCGGTCCCTCACTG CTGGGTGGCTCAATGGTTAGGGGTGCCTGCCTGCGTGCGGTTACCGGCACCCTGTGCGGTGGCT CACAGTCACCTGGACGTGAGGCGGCGTGCTGGCCTTGACAAGAACGTCATCCATGGGCTTCTAT ATCTGAACGCTGGGTAGCTCAGACTGGAGCTGTTTGAAAGGGTTAGAAGGGTTCGGGGGTGTTG CTGGTTGGAGGGAGTCTGTCACTGGGGTTAGGCTTTGAGGTTTTGAAGGGTGAATGCCAATCAC AGGGTGTCTCTCTCTGACTACAGGTCAGGACGTAGCTCCCAGCCACTGCTCCGTTGCACCATGG GCCCTGACATGATAGTAGCAGACTAAGCGTCCGAAACTGTAACACACACATGTACACA
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Additional Information
Nomenclature History
Date |
Current Symbol |
Current Name |
Previous Symbol |
Previous Name |
Description |
Reference |
Status |
2013-12-18 |
LOC102551333 |
uncharacterized LOC102551333 |
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Symbol and Name status set to provisional |
70820 |
PROVISIONAL |
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