Ppp2r1a-ps1 (protein phosphatase 2 scaffold subunit A alpha, pseudogene 1) - Rat Genome Database

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Gene: Ppp2r1a-ps1 (protein phosphatase 2 scaffold subunit A alpha, pseudogene 1) Rattus norvegicus
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Symbol: Ppp2r1a-ps1
Name: protein phosphatase 2 scaffold subunit A alpha, pseudogene 1
RGD ID: 7727798
Description:
Type: pseudo
RefSeq Status: MODEL
Previously known as: LOC102556378; LOC498537; serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A; serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform-like; similar to alpha isoform of regulatory subunit A, protein phosphatase 2
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81544,356,019 - 44,357,770 (-)NCBIGRCr8
mRatBN7.21540,180,436 - 40,182,210 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.01542,646,058 - 42,653,565 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01548,944,606 - 48,946,311 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41545,385,524 - 45,393,031 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1539,852,174 - 39,859,681 (-)NCBICelera
Cytogenetic Map15p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

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Variants in Ppp2r1a-ps1
5 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
731170Pur3Proteinuria QTL 32.30.0005urine protein amount (VT:0005160)urine protein excretion rate (CMO:0000759)15141686771Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15142356671Rat
2298549Neuinf12Neuroinflammation QTL 123.5nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)15155302115Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1530632945306329Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15226636846921453Rat
1582251Gluco24Glucose level QTL 243.20.0008blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)15553075650530756Rat
631273Lecl2Lens clarity QTL 20.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)151059608955596089Rat
2300167Bmd63Bone mineral density QTL 635.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
2300173Bmd62Bone mineral density QTL 6212.80.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
2293688Bss29Bone structure and strength QTL 295.310.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)151111114256111142Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151249614165205939Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151672552880672115Rat
1331729Rf42Renal function QTL 423.071kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)151736289773690657Rat
2324620Coatc3Coat color QTL 3coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)151985656646187442Rat
10054130Srcrt8Stress Responsive Cort QTL 82.180.0085blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)152211793367117933Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)152280624098288169Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)152280624098288169Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)152280624098288169Rat
1582214Stl21Serum triglyceride level QTL 213.10.022blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)152803066582262678Rat
1582227Gluco30Glucose level QTL 303.60.0003blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)152803066582262678Rat
1582228Epfw3Epididymal fat weight QTL 34.10.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat
1582242Gluco28Glucose level QTL 283.30.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)152803066582262678Rat
1582244Bw79Body weight QTL 7940.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat
2293691Bmd37Bone mineral density QTL 376.60.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)153361105871477291Rat
2293686Bmd36Bone mineral density QTL 367.40.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)153361105871477291Rat
1598828Glom14Glomerulus QTL 142.5kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)153405413979054139Rat


Expression


Sequence

Nucleotide Sequences
GenBank Nucleotide JAXUCZ010000015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-13339 BioCyc
NCBI Gene LOC102556378 ENTREZGENE
PhenoGen Ppp2r1a-ps1 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Ppp2r1a-ps1  protein phosphatase 2 scaffold subunit A alpha, pseudogene 1  LOC102556378  serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform-like  Symbol and Name Changed 1299863 APPROVED
2015-07-29 LOC102556378  serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform-like  LOC498537  similar to alpha isoform of regulatory subunit A, protein phosphatase 2  Data merged from RGD:1590794 737654 PROVISIONAL
2013-12-18 LOC102556378  serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-20 LOC498537  similar to alpha isoform of regulatory subunit A, protein phosphatase 2      Symbol and Name status set to provisional 70820 PROVISIONAL