LOC102552347 (uncharacterized LOC102552347) - Rat Genome Database

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Gene: LOC102552347 (uncharacterized LOC102552347) Rattus norvegicus
Analyze
Symbol: LOC102552347
Name: uncharacterized LOC102552347
RGD ID: 7724613
Description:
Type: ncrna
RefSeq Status: MODEL
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr816760,908 - 768,627 (+)NCBIGRCr8
mRatBN7.216754,086 - 761,766 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.0161,450,198 - 1,457,137 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0161,441,825 - 1,449,480 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera16735,163 - 742,102 (+)NCBICelera
Cytogenetic Map16p16NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in LOC102552347
24 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2325838Bp347Blood pressure QTL 3470.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1613080679Rat
1357403Slep4Serum leptin concentration QTL 43.91blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1619639137Rat
1600369Hcas8Hepatocarcinoma susceptibility QTL 8liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)16122477621Rat
631830Alc7Alcohol consumption QTL 72.9consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16126727669Rat
634355Rends4Renal damage susceptibility QTL 40.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)16126727669Rat
1582235Insul8Insulin level QTL 83.30.0063blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)16126727669Rat
9590151Scort8Serum corticosterone level QTL 88.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)16130836262Rat
2302380Slep6Serum leptin concentration QTL 63.36blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)16132139025Rat
2307172Activ4Activity QTL 43.710.00023locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)16133418960Rat
1354584Despr6Despair related QTL 63.10.0067locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16139533930Rat
2303566Bw90Body weight QTL 902body mass (VT:0001259)body weight (CMO:0000012)16139533930Rat
631561Hcuc2Hepatic copper content QTL 22.8liver copper amount (VT:0003065)liver total copper weight (CMO:0001507)16139533949Rat
6903319Bw114Body weight QTL 1142.70.0037body mass (VT:0001259)body weight (CMO:0000012)16143534949Rat
7411664Foco30Food consumption QTL 30110.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)16144588133Rat
1354625Despr7Despair related QTL 73.160.016locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16144977551Rat
1549842Bp248Blood pressure QTL 2480.01arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)163802452995463Rat
1600378Arunc4Aerobic running capacity QTL 40.03exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)1638024580345693Rat


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XR_005494834
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr816762,020 - 768,627 (+)NCBI
mRatBN7.216755,178 - 761,766 (+)NCBI
RefSeq Acc Id: XR_010058524
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr816760,908 - 768,627 (+)NCBI
RefSeq Acc Id: XR_596345
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr816762,020 - 768,627 (+)NCBI
mRatBN7.216755,178 - 761,766 (+)NCBI
Rnor_6.0161,450,198 - 1,457,137 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-12290 BioCyc
NCBI Gene LOC102552347 ENTREZGENE
PhenoGen LOC102552347 PhenoGen
RNAcentral URS0000CCF737 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-12-18 LOC102552347  uncharacterized LOC102552347      Symbol and Name status set to provisional 70820 PROVISIONAL