LOC102554907 (uncharacterized LOC102554907) - Rat Genome Database

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Gene: LOC102554907 (uncharacterized LOC102554907) Rattus norvegicus
Analyze
Symbol: LOC102554907
Name: uncharacterized LOC102554907
RGD ID: 7700261
Description:
Type: ncrna
RefSeq Status: MODEL
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83186,724,942 - 186,744,128 (+)NCBIGRCr8
mRatBN7.23166,346,012 - 166,366,449 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.03174,773,925 - 174,792,066 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.03182,310,104 - 182,327,941 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera3166,202,741 - 166,220,922 (-)NCBICelera
Cytogenetic Map3q43NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in LOC102554907
94 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)343827364169034231Rat
2312659Slep7Serum leptin concentration QTL 70.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)398535255168026850Rat
2312670Bw94Body weight QTL 940.01inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)398535255168026850Rat
2312673Scl63Serum cholesterol level QTL 630.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)398535255168026850Rat
10755461Coatc16Coat color QTL 16coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)3122438700167438700Rat
631541Bp81Blood pressure QTL 814arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3124122556169034231Rat
2303620Vencon4Ventilatory control QTL 43.9respiration trait (VT:0001943)tidal volume (CMO:0000222)3127162703168026850Rat
1578656Vnigr2Vascular neointimal growth QTL 24.2artery morphology trait (VT:0002191)lesioned artery residual lumen area (CMO:0001417)3130656562169034231Rat
1578653Vnigr3Vascular neointimal growth QTL 33.1artery morphology trait (VT:0002191)artery neointimal hyperplastic lesion area (CMO:0001414)3130656562169034231Rat
9589106Insul23Insulin level QTL 2313.860.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)3131635904169034231Rat
2298477Eau4Experimental allergic uveoretinitis QTL 40.0011uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)3137398739169034231Rat
8552952Pigfal13Plasma insulin-like growth factor 1 level QTL 13blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)3138799500169034231Rat
1298068Bp167Blood pressure QTL 1670.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3141074471169034231Rat
2317883Alcrsp26Alcohol response QTL 261.80.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)3145526770169034231Rat
8552791Vie2Viral induced encephalitis QTL 24.1brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)3145956084169034231Rat
1578666Vnigr1Vascular neointimal growth QTL 14.6artery morphology trait (VT:0002191)artery lumen area (CMO:0001409)3149040888168026850Rat
1300161Rf10Renal function QTL 103.57renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)3161192952169034231Rat


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XR_005502855
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83186,724,942 - 186,730,603 (+)NCBI
mRatBN7.23166,346,012 - 166,354,358 (+)NCBI
RefSeq Acc Id: XR_005502856
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83186,724,946 - 186,744,128 (+)NCBI
mRatBN7.23166,346,012 - 166,366,449 (+)NCBI
RefSeq Acc Id: XR_010065561
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83186,724,942 - 186,732,028 (+)NCBI
RefSeq Acc Id: XR_352997
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83186,724,946 - 186,744,128 (+)NCBI
mRatBN7.23166,346,012 - 166,366,449 (+)NCBI
Rnor_6.03174,773,925 - 174,792,066 (+)NCBI
Rnor_5.03182,310,104 - 182,327,941 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-46385 BioCyc
NCBI Gene LOC102554907 ENTREZGENE
PhenoGen LOC102554907 PhenoGen
RNAcentral URS0000CCF676 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-12-18 LOC102554907  uncharacterized LOC102554907      Symbol and Name status set to provisional 70820 PROVISIONAL