C15h13orf42 (similar to human chromosome 13 open reading frame 42) - Rat Genome Database

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Gene: C15h13orf42 (similar to human chromosome 13 open reading frame 42) Rattus norvegicus
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Symbol: C15h13orf42 (Ensembl: LOC102554746)
Name: similar to human chromosome 13 open reading frame 42 (Ensembl:uncharacterized LOC102554746)
RGD ID: 7683338
Description: ASSOCIATED WITH chromosome 13q14 deletion syndrome (ortholog); INTERACTS WITH aflatoxin B1 (ortholog); benzo[e]pyrene (ortholog); methapyrilene (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC102554746; uncharacterized LOC102554746; uncharacterized protein C13orf42 homolog; uncharacterized protein LOC102554746
RGD Orthologs
Human
Mouse
Bonobo
Squirrel
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81540,852,879 - 40,877,320 (-)NCBIGRCr8
mRatBN7.21536,674,840 - 36,701,304 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1536,677,527 - 36,701,211 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01545,559,028 - 45,581,410 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01549,335,337 - 49,357,187 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1536,367,122 - 36,389,201 (-)NCBICelera
Cytogenetic Map15p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
C15h13orf42
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81540,852,879 - 40,877,320 (-)NCBIGRCr8
mRatBN7.21536,674,840 - 36,701,304 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1536,677,527 - 36,701,211 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01545,559,028 - 45,581,410 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01549,335,337 - 49,357,187 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1536,367,122 - 36,389,201 (-)NCBICelera
Cytogenetic Map15p12NCBI
C13orf42
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381351,082,119 - 51,172,388 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1351,082,119 - 51,200,252 (-)EnsemblGRCh38hg38GRCh38
GRCh371351,656,255 - 51,746,524 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361350,556,288 - 50,621,130 (-)NCBINCBI36Build 36hg18NCBI36
Celera1332,707,440 - 32,735,212 (-)NCBICelera
Cytogenetic Map13q14.3NCBI
HuRef1332,447,155 - 32,476,357 (-)NCBIHuRef
CHM1_11351,625,681 - 51,654,895 (-)NCBICHM1_1
T2T-CHM13v2.01350,297,185 - 50,387,475 (-)NCBIT2T-CHM13v2.0
Gm4131
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391462,699,937 - 62,718,604 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1462,700,863 - 62,804,370 (-)EnsemblGRCm39 Ensembl
GRCm381462,462,488 - 62,481,155 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1462,463,414 - 62,566,921 (-)EnsemblGRCm38mm10GRCm38
MGSCv371463,082,447 - 63,100,602 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361463,082,447 - 63,100,602 (-)NCBIMGSCv36mm8
Celera1460,225,122 - 60,244,397 (-)NCBICelera
Cytogenetic Map14D1NCBI
C14H13orf42
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21452,520,582 - 52,549,232 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11351,163,370 - 51,193,166 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01332,216,898 - 32,247,120 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11350,961,466 - 50,992,126 (-)NCBIpanpan1.1PanPan1.1panPan2
CUNH13orf42
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945160,452,088 - 160,482,108 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365653,936,666 - 3,964,309 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365653,936,666 - 3,964,309 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CUNH13orf42
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1328,960,806 - 28,991,668 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605714,831,246 - 14,862,296 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

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Variants in C15h13orf42
129 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
731170Pur3Proteinuria QTL 32.30.0005urine protein amount (VT:0005160)urine protein excretion rate (CMO:0000759)15141686771Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15142356671Rat
2298549Neuinf12Neuroinflammation QTL 123.5nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)15155302115Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1530632945306329Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15226636846921453Rat
1582251Gluco24Glucose level QTL 243.20.0008blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)15553075650530756Rat
631273Lecl2Lens clarity QTL 20.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)151059608955596089Rat
2300167Bmd63Bone mineral density QTL 635.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
2300173Bmd62Bone mineral density QTL 6212.80.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
2293688Bss29Bone structure and strength QTL 295.310.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)151111114256111142Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151249614165205939Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151672552880672115Rat
1331729Rf42Renal function QTL 423.071kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)151736289773690657Rat
2324620Coatc3Coat color QTL 3coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)151985656646187442Rat
10054130Srcrt8Stress Responsive Cort QTL 82.180.0085blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)152211793367117933Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)152280624098288169Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)152280624098288169Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)152280624098288169Rat
1582214Stl21Serum triglyceride level QTL 213.10.022blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)152803066582262678Rat
1582227Gluco30Glucose level QTL 303.60.0003blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)152803066582262678Rat
1582228Epfw3Epididymal fat weight QTL 34.10.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat
1582242Gluco28Glucose level QTL 283.30.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)152803066582262678Rat
1582244Bw79Body weight QTL 7940.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat
2293691Bmd37Bone mineral density QTL 376.60.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)153361105871477291Rat
2293686Bmd36Bone mineral density QTL 367.40.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)153361105871477291Rat
1598828Glom14Glomerulus QTL 142.5kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)153405413979054139Rat


Expression


Sequence


RefSeq Acc Id: ENSRNOT00000099944   ⟹   ENSRNOP00000087883
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1536,677,527 - 36,701,211 (-)Ensembl
RefSeq Acc Id: XM_039093912   ⟹   XP_038949840
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81540,852,879 - 40,877,320 (-)NCBI
mRatBN7.21536,674,840 - 36,701,304 (-)NCBI
Protein Sequences
Protein RefSeqs XP_038949840 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000087883.1
RefSeq Acc Id: XP_038949840   ⟸   XM_039093912
- UniProtKB: A0A8I6GFK7 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000087883   ⟸   ENSRNOT00000099944

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-13458 BioCyc
Ensembl Genes ENSRNOG00000070558 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000099944.1 UniProtKB/TrEMBL
NCBI Gene LOC102554746 ENTREZGENE
PhenoGen C15h13orf42 PhenoGen
RatGTEx ENSRNOG00000070558 RatGTEx
UniProt A0A8I6GFK7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 C15h13orf42  similar to human chromosome 13 open reading frame 42  LOC102554746  uncharacterized LOC102554746  Symbol and Name Changed 1299863 APPROVED
2013-12-18 LOC102554746  uncharacterized LOC102554746      Symbol and Name status set to provisional 70820 PROVISIONAL