LOC102555809 (rho GTPase-activating protein 20-like) - Rat Genome Database

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Gene: LOC102555809 (rho GTPase-activating protein 20-like) Rattus norvegicus
Analyze
Symbol: LOC102555809
Name: rho GTPase-activating protein 20-like
RGD ID: 7677670
Description:
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC690339; similar to GTPase activating protein testicular GAP1; uncharacterized protein LOC102555809
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8823,902,362 - 23,938,884 (-)NCBIGRCr8
mRatBN7.2815,622,375 - 15,661,479 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.0817,668,536 - 17,702,266 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0817,740,716 - 17,774,395 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4815,990,425 - 16,021,938 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera817,054,356 - 17,091,016 (-)NCBICelera
Cytogenetic Map8q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in LOC102555809
257 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
9590084Insglur5Insulin/glucose ratio QTL 518.540.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)8124597739Rat
2317882Alcrsp24Alcohol response QTL 243.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)8125902202Rat
12880023Bw184Body weight QTL 1840.001body mass (VT:0001259)body weight (CMO:0000012)8209764047097640Rat
12880025Cm102Cardiac mass QTL 1020.044heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)8209764047097640Rat
12880028Cm103Cardiac mass QTL 1030.02heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)8209764047097640Rat
12880044Am9Aortic mass QTL 90.007aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)8209764047097640Rat
2317032Ginf2Gastrointestinal inflammation QTL 23.210.005liver integrity trait (VT:0010547)liver granuloma severity score (CMO:0002157)8470581049705810Rat
2317036Livw3Liver weight QTL 32.430.01liver mass (VT:0003402)liver weight to body weight ratio (CMO:0000633)8470581049705810Rat
2317048Ginf1Gastrointestinal inflammation QTL 13.520.005cecum mucosa thickness (VT:0010234)enterocolitis severity score (CMO:0002138)8470581049705810Rat
2301416Bp315Blood pressure QTL 3150.008arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)8767057852670578Rat
1354595Despr4Despair related QTL 42.160.0036locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)8768895552688955Rat
1354627Despr14Despair related QTL 140.0056locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)8768895552688955Rat
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)88462195110921472Rat
2317030Wbc5White blood cell count QTL 53.210.005leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)8873663553736635Rat
2317051Aia18Adjuvant induced arthritis QTL 182.42joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)8873663553736635Rat
1598824Memor4Memory QTL 42.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)8971222053356647Rat
1357398Slep3Serum leptin concentration QTL 33.43blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)8971246341866876Rat
2302367Slep5Serum leptin concentration QTL 53.43blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)8971246341866876Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)810378157112202585Rat
1558646Swd5Spike wave discharge measurement QTL 53.450.00036brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge frequency (CMO:0001742)81490675159906751Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_017595966 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595967 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595968 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595969 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595970 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595971 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603569 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603570 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603571 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603572 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603573 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082238 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082240 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082241 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082242 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082243 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082244 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266291 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266292 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266293 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005487981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005487982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010054088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_017595967   ⟹   XP_017451456
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8823,902,362 - 23,935,833 (-)NCBI
mRatBN7.2815,622,375 - 15,659,528 (-)NCBI
Rnor_6.0817,668,536 - 17,699,152 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039082238   ⟹   XP_038938166
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8823,902,362 - 23,935,858 (-)NCBI
mRatBN7.2815,622,375 - 15,659,548 (-)NCBI
RefSeq Acc Id: XM_039082240   ⟹   XP_038938168
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8823,902,362 - 23,937,787 (-)NCBI
mRatBN7.2815,622,375 - 15,661,479 (-)NCBI
RefSeq Acc Id: XM_039082241   ⟹   XP_038938169
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8823,902,362 - 23,935,849 (-)NCBI
mRatBN7.2815,622,375 - 15,659,542 (-)NCBI
RefSeq Acc Id: XM_039082242   ⟹   XP_038938170
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8823,902,362 - 23,930,921 (-)NCBI
mRatBN7.2815,622,375 - 15,652,639 (-)NCBI
RefSeq Acc Id: XM_039082243   ⟹   XP_038938171
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8823,902,362 - 23,928,804 (-)NCBI
mRatBN7.2815,622,375 - 15,652,480 (-)NCBI
RefSeq Acc Id: XM_039082244   ⟹   XP_038938172
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8823,918,623 - 23,935,856 (-)NCBI
mRatBN7.2815,642,163 - 15,659,543 (-)NCBI
RefSeq Acc Id: XM_063266291   ⟹   XP_063122361
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8823,902,362 - 23,938,884 (-)NCBI
RefSeq Acc Id: XM_063266292   ⟹   XP_063122362
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8823,903,704 - 23,938,884 (-)NCBI
RefSeq Acc Id: XM_063266293   ⟹   XP_063122363
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8823,918,623 - 23,938,884 (-)NCBI
RefSeq Acc Id: XR_005487981
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8823,902,362 - 23,935,848 (-)NCBI
mRatBN7.2815,622,375 - 15,659,542 (-)NCBI
RefSeq Acc Id: XR_005487982
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8823,916,776 - 23,935,857 (-)NCBI
mRatBN7.2815,640,444 - 15,659,544 (-)NCBI
RefSeq Acc Id: XR_010054088
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8823,902,362 - 23,938,884 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_017451456   ⟸   XM_017595967
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_038938168   ⟸   XM_039082240
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038938166   ⟸   XM_039082238
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038938169   ⟸   XM_039082241
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038938170   ⟸   XM_039082242
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038938171   ⟸   XM_039082243
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038938172   ⟸   XM_039082244
- Peptide Label: isoform X8
RefSeq Acc Id: XP_063122361   ⟸   XM_063266291
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063122362   ⟸   XM_063266292
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063122363   ⟸   XM_063266293
- Peptide Label: isoform X9


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-31599 BioCyc
NCBI Gene LOC102555809 ENTREZGENE
PhenoGen LOC102555809 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-07-29 LOC102555809  rho GTPase-activating protein 20-like  LOC690339  similar to GTPase activating protein testicular GAP1  Data merged from RGD:1597349 737654 PROVISIONAL
2013-12-18 LOC102555809  rho GTPase-activating protein 20-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-01-09 LOC690339  similar to GTPase activating protein testicular GAP1  LOC686654  similar to GTPase activating protein testicular GAP1  Data merged from RGD:1594994 1643240 APPROVED
2006-11-20 LOC690339  similar to GTPase activating protein testicular GAP1      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-20 LOC686654  similar to GTPase activating protein testicular GAP1      Symbol and Name status set to provisional 70820 PROVISIONAL