C130050O18Rikl (RIKEN cDNA C130050O18 gene like)

Gene: C130050O18Rikl (RIKEN cDNA C130050O18 gene like) Rattus norvegicus

Analyze

No known orthologs.

Symbol:

C130050O18Rikl (Ensembl: LOC102546864)

Name:

RIKEN cDNA C130050O18 gene like (Ensembl:uncharacterized LOC102546864)

RGD ID:

7673409

Description:

Predicted to be located in membrane.

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

LOC102546864; uncharacterized LOC102546864; uncharacterized protein C130050O18Rikl; uncharacterized protein LOC102546864

RGD Orthologs

Alliance Genes

More Info

homologs ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	20,343,597 - 20,355,312 (-)	NCBI		GRCr8
mRatBN7.2	12	15,229,743 - 15,241,457 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	15,229,743 - 15,242,139 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	12	17,321,270 - 17,333,460 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	17,321,616 - 17,322,608 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	12	19,308,234 - 19,319,984 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	12	16,983,606 - 16,999,596 (-)	NCBI		Celera
Cytogenetic Map	12	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

membrane (IEA)

References

Genomics

Variants

Variants in C130050O18Rikl
26 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	64
Count of miRNA genes:	59
Interacting mature miRNAs:	64
Transcripts:	ENSRNOT00000033038
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2312418	Kidm41	Kidney mass QTL 41	3.7	0.0001	kidney mass (VT:0002707)	single kidney wet weight to body weight ratio (CMO:0000622)	12	1	19611090	Rat
10755457	Coatc14	Coat color QTL 14		0.01759	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	12	1	22591684	Rat
6893681	Bw109	Body weight QTL 109	2.3	0.004	body mass (VT:0001259)	body weight (CMO:0000012)	12	1	23297788	Rat
1581516	Cm56	Cardiac mass QTL 56	4.2	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	12	1	29333307	Rat
1598855	Bp294	Blood pressure QTL 294	3.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	12	1	34851688	Rat
7411660	Foco28	Food consumption QTL 28	10.9	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	1	42110980	Rat
9590086	Insglur6	Insulin/glucose ratio QTL 6	18.97	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	12	1	42110980	Rat
8694179	Bw150	Body weight QTL 150	2.9	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	12	1	42110980	Rat
7411586	Foco5	Food consumption QTL 5	5.4	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	1	42110980	Rat
7411595	Foco9	Food consumption QTL 9	4	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	1	42110980	Rat
7411545	Bw128	Body weight QTL 128	5.2	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	12	1	42110980	Rat
9590147	Scort7	Serum corticosterone level QTL 7	13.61	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	12	1	42110980	Rat
2303575	Insul14	Insulin level QTL 14	4		blood insulin amount (VT:0001560)	blood insulin level (CMO:0000349)	12	1	42450532	Rat
737979	Pia22	Pristane induced arthritis QTL 22	53.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	1	44465750	Rat
634351	Apr5	Acute phase response QTL 5	6.7		blood interleukin-6 amount (VT:0008595)	plasma interleukin-6 level (CMO:0001927)	12	1	44503507	Rat
2302042	Pia38	Pristane induced arthritis QTL 38	3.5	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G1 level (CMO:0002115)	12	1	44503507	Rat
634350	Apr4	Acute phase response QTL 4	6		orosomucoid 1 amount (VT:0010541)	plasma orosomucoid 1 level (CMO:0001467)	12	1172005	46172005	Rat
8552918	Pigfal7	Plasma insulin-like growth factor 1 level QTL 7			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	5564495	46669029	Rat
7411547	Bw129	Body weight QTL 129		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	6	5564495	46669029	Rat
7411597	Foco10	Food consumption QTL 10		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	5564495	46669029	Rat
7411641	Foco19	Food consumption QTL 19	27.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	5564495	46669029	Rat
8552964	Pigfal17	Plasma insulin-like growth factor 1 level QTL 17	3.5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	5564495	46669029	Rat
7411588	Foco6	Food consumption QTL 6		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	5564495	46669029	Rat
8552912	Pigfal6	Plasma insulin-like growth factor 1 level QTL 6	5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	5564498	46669029	Rat
10059594	Kidm46	Kidney mass QTL 46	3.79	0.025	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	12	6107579	46669029	Rat
1600391	Edcs2	Endometrial carcinoma susceptibility QTL2	3.5	0.01	uterus morphology trait (VT:0001120)	percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)	12	6833190	17870186	Rat
1302792	Scl21	Serum cholesterol level QTL 21	3.8	0.0011	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	12	7196730	46669029	Rat
2293086	Iddm30	Insulin dependent diabetes mellitus QTL 30	3.82		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	8449490	28302290	Rat
61331	Eau2	Experimental allergic uveoretinitis QTL 2		0.0005	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	12	8525423	28064601	Rat
1300157	Rf21	Renal function QTL 21	4.4		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	12	9318216	32103380	Rat
1549829	Scl48	Serum cholesterol level QTL 48	5		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	12	9603277	46669029	Rat
2293699	Bss49	Bone structure and strength QTL 49	5.61	0.0001	lumbar vertebra size trait (VT:0010518)	lumbar vertebra trabecular cross-sectional area (CMO:0001692)	12	10474137	46669029	Rat
2300186	Bmd59	Bone mineral density QTL 59	7.1	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	12	10474137	46669029	Rat
1331786	Kidm11	Kidney mass QTL 11	3.571		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	12	11073825	24234895	Rat
1331755	Bp219	Blood pressure QTL 219	3.041		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	12	11073825	28064557	Rat
1331761	Bp218	Blood pressure QTL 218	2.973		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	12	11073825	45055165	Rat
61404	Bw120	Body weight QTL 120	5.1		body mass (VT:0001259)	body mass index (BMI) (CMO:0000105)	12	12351619	46669029	Rat
1641928	Alcrsp5	Alcohol response QTL 5			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	12	12812385	46669029	Rat
2303569	Gluco44	Glucose level QTL 44	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	12812385	46669029	Rat
7204484	Bp358	Blood pressure QTL 358		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	12	13008296	19212979	Rat
1549902	Bp269	Blood pressure QTL 269			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	12	13182736	46669029	Rat
1549912	Bp268	Blood pressure QTL 268			arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	10	13182736	46669029	Rat
2302060	Pia37	Pristane induced arthritis QTL 37	6.1	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G1 level (CMO:0002115)	12	13198157	46669029	Rat
61416	Pia4	Pristane induced arthritis QTL 4	8.4		joint integrity trait (VT:0010548)	arthritic paw count (CMO:0001460)	12	13635523	30827399	Rat
61421	Cia12	Collagen induced arthritis QTL 12	4.6		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	13635523	35682913	Rat
61443	Btemp2	Thermal response to stress QTL 2	3.3	0.000094	body temperature trait (VT:0005535)	core body temperature (CMO:0001036)	12	15025183	20794014	Rat

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium			4		6
Low	2	42	52	40	13	40	3	3	65	32	41	11	3
Below cutoff	1	1	1	1		1	5	8	9	3			5

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_006221280	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006221281	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006248979	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008759034	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008769040	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598496	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017604448	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271734	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAXUCZ010000012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000033038 ⟹ ENSRNOP00000037689

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	12	15,229,743 - 15,242,139 (-)	Ensembl
Rnor_6.0 Ensembl	12	17,321,616 - 17,322,608 (-)	Ensembl

RefSeq Acc Id:

XM_006248979 ⟹ XP_006249041

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	20,343,597 - 20,355,310 (-)	NCBI
mRatBN7.2	12	15,229,743 - 15,241,457 (-)	NCBI
Rnor_6.0	12	17,321,270 - 17,333,460 (-)	NCBI
Rnor_5.0	12	19,308,234 - 19,319,984 (-)	NCBI

Sequence:

show sequence

CTGGCTGGGGCTCTCCTCAGAACTTGGTGCCTATGCTCAGCACTCCTCTCAGCCAGCATCGGGG
CATCCTGCGCAAAGCCCGGTGGAGAGGACACAAGCAGATGTGCCTTCTGGCATCATGTCCAGGT
TCAGCCCCATTCCATGCGACCCCAAGATGCAGCCCTAGCTGCTAGTGCACAGCGTAGTAAGGGG
TGCCAGGTATCACCTGCCATCCAGACTGCAGTGTCCACTGTCCTGAGTCACCCATGTAGGAGAC
AGAGGGACGAGACCCTCATCCATGTGGCAGCGTTCCAGGCACTGGTTTGCCCTCATTGGGAGGA
CTTTTTCCTGCTGGGTGGGGCTTCAGCTCCTATTTTAGGTTACGAATGTCTTTGCCTTCTGGGA
GGGACCTACTGTGAGTGGCCAGTACACTTCTGCAGGAAAGCTCTGGAAACCTCAGACTCACATA
CACGTCACTCTTCCACCTCAGACATAGGCCCATTTGGATTCTTCGGGGTCACATGGTCCAAACA
TAGCCCGCTTAAACACAGTGTGTGGTTTGGACAACTCCAGGCTAAATCCTGTTTTTCCTTAGAA
ACTGTGGGCGTCTGTGCCAGCCTGTCTTTGGAAAGTGTGGAGCAATGGAGGGAAGACTGGATGA
ACAAAGAACTTGTGCCAGCCTCACAGCAGCCCCCCAGTGCTGACAGAGCTTTGTTTGACCCCAG
GGCCTAGCACAGGTGAGCACTGTCTTATGTCCTGGGGAGGTAGGCGCCCTGCTCACCCAGCTTG
TCTTCCTGCGTGTGACTGACCAGTGAATGCACCCAGGGCCACTCTCAGCTGTGGTCTGAGAACT
CTCCTGAAGATGGACCGTCACAACATGTCCTGGATCCACTACCCGAGCCAAGTGTCCCCGGCTG
TGGAGGACGTCATCGCAGCACAGAGCATCATTTCTAGGTGCACACATGTGTATGTGGCAGTGTG
CGTCCCACTGAGCCTAGTGCTGGGGCTCTTCAGTCTCAACGTCTTCATCCGGGACCGTACTAGG
CTGGGGGTACTGGACAGACTCCTTGCAGGCCTCACGGCCACTAGCATCTCAGTGACTCTACTGT
CCCTCAATGCTGCTGGCCGACCCGACTACATATCCACGACAAACCTGGGCTGCGGGGCACTCTC
ATTCTTCTCTAATGTCTGCTACTTCATGGCCCAGTACCTGCAGGGAGCCACGCTTCCCCTGGCC
TTTCTGCCGGGATCTCCCTGCTGTCAGCTCTTGGCAAGGCCTGTGGCAAGCCTAGCTGCTATCG
GGGGCTGTGCTGTCTGTAGCGCCCTCATCGTGGTGTCCCTGCTGGGTACATTTGGCGAGTTGCA
CACAACCACCATGTGCCAGGCAGATCCGCTGACTGCATGGCCCGAATACGAGATTGTCAAGTTC
AGCCTGGGCTTTGCACTTGCTTTGAGCTTCCAGATGGTTCTCTTCCTCCTATATGCTACACAGC
CGGCCTGGCGAGTGGCTCCTGATCAGAGGGACACAGCGTCTGGACGCTGGGTGGTACTGGCTGT
GGCTCTCAACATGTTCGCCTGCAGACTCTTCTTCAATGTGGTCCTCCTGCATCGGGCCCAGCTG
AAGCTGTGGAAGGATGTGGGCTCCCCTCGGGATGAGCTGCTCATGAACCTCGCAGAGCTGGCCC
TGTCCGGGGAGAGCTGCATCAACATGGTGGCCATCCTCCTCCTCCACACACCATGCAGGCTCAG
GTTGCTTGGCCTCCTTGAGCACCTCACACAGAGATGCAGGCGGGGGCCGGACACCAGCATGTCC
TTGAACAGAGTAGGGGGCTAGCCAGGGCCTGCCTGCTGGCACAGGCCACACCCCTCGCTAGTGC
TCAGGGAAGACGGCCTTCCCAGGGAGCCTGAGCAGGCTTCCTATGTTTTGGATGGTTAGCTTGC
CTATGTTTACCTCAACCTACGCAAATCAAGACGGTCTCTCTTCCCACACCTTCAGTCACACTTG
AGGGACGCAGTGACATAGGTAAGGAGGCTAACCAAAAACCATGGGTCTGCTGGAGGGTGTCCTG
ACGATGATGGCACATGTAACCACCTTGCCTGTTGGTTGCCACCTTCTACGCAACAATCCAGGCT
GACGACACAGGAAAGGCACTGTGGAAATAAACATGGTTTTCACCTAA

hide sequence

RefSeq Acc Id:

XM_063271734 ⟹ XP_063127804

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	20,343,597 - 20,355,312 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_006249041	(Get FASTA)	NCBI Sequence Viewer
	XP_063127804	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000037689
	ENSRNOP00000037689.7

RefSeq Acc Id:

XP_006249041 ⟸ XM_006248979

- UniProtKB:

F1M1V7 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MDRHNMSWIHYPSQVSPAVEDVIAAQSIISRCTHVYVAVCVPLSLVLGLFSLNVFIRDRTRLGV
LDRLLAGLTATSISVTLLSLNAAGRPDYISTTNLGCGALSFFSNVCYFMAQYLQGATLPLAFLP
GSPCCQLLARPVASLAAIGGCAVCSALIVVSLLGTFGELHTTTMCQADPLTAWPEYEIVKFSLG
FALALSFQMVLFLLYATQPAWRVAPDQRDTASGRWVVLAVALNMFACRLFFNVVLLHRAQLKLW
KDVGSPRDELLMNLAELALSGESCINMVAILLLHTPCRLRLLGLLEHLTQRCRRGPDTSMSLNR
VGG

hide sequence

RefSeq Acc Id:

ENSRNOP00000037689 ⟸ ENSRNOT00000033038

RefSeq Acc Id:

XP_063127804 ⟸ XM_063271734

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-F1M1V7-F1-model_v2	AlphaFold	F1M1V7	1-330	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:7673409	AgrOrtholog
BioCyc Gene	G2FUF-19894	BioCyc
Ensembl Genes	ENSRNOG00000022426	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000033038.7	UniProtKB/TrEMBL
KEGG Report	rno:102546864	UniProtKB/TrEMBL
NCBI Gene	LOC102546864	ENTREZGENE
PANTHER	C130050O18RIK PROTEIN	UniProtKB/TrEMBL
	C130050O18RIK PROTEIN	UniProtKB/TrEMBL
PhenoGen	C130050O18Rikl	PhenoGen
RatGTEx	ENSRNOG00000022426	RatGTEx
UniProt	F1M1V7	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2023-09-19	C130050O18Rikl	RIKEN cDNA C130050O18 gene like	LOC102546864	uncharacterized LOC102546864	Symbol and Name Changed	1299863	APPROVED
2013-12-18	LOC102546864	uncharacterized LOC102546864			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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