Zfp950l8 (zinc finger protein 950 like 8) - Rat Genome Database

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Gene: Zfp950l8 (zinc finger protein 950 like 8) Rattus norvegicus
Analyze
Symbol: Zfp950l8 (Ensembl: LOC102556157)
Name: zinc finger protein 950 like 8 (Ensembl:zinc finger protein 91-like)
RGD ID: 7626961
Description: Predicted to enable metal ion binding activity. Predicted to be involved in regulation of DNA-templated transcription.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC102556157; zinc finger protein 431-like; zinc finger protein 91-like
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr812,061,007 - 2,084,254 (+)NCBIGRCr8
mRatBN7.21284,195 - 301,267 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1284,652 - 287,551 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0168,891,924 - 68,904,313 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0170,297,151 - 70,309,466 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Cytogenetic Map1p13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IEA)

Molecular Function

References

Genomics

Variants

.
Variants in Zfp950l8
359 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354647Despr8Despair related QTL 80.0000341locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1124744506Rat
2298546Neuinf4Neuroinflammation QTL 45.1nervous system integrity trait (VT:0010566)spinal cord RT1-B protein level (CMO:0002132)1128736750Rat
2313053Bss51Bone structure and strength QTL 513.80.0001tibia length (VT:0004357)tibia length (CMO:0000450)1132356093Rat
2313070Bss52Bone structure and strength QTL 524.40.0001body length (VT:0001256)body length (CMO:0000013)1132356093Rat
2313090Bmd69Bone mineral density QTL 694.40.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)1132356093Rat
738020Pia8Pristane induced arthritis QTL 84.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1165833076Rat


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000103491   ⟹   ENSRNOP00000093479
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1284,652 - 287,551 (-)Ensembl
RefSeq Acc Id: XM_039098315   ⟹   XP_038954243
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr812,061,007 - 2,084,254 (+)NCBI
mRatBN7.21284,195 - 301,267 (-)NCBI
Protein Sequences
Protein RefSeqs XP_038954243 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000090202.1
  ENSRNOP00000093479.1
Reference Protein Sequences
RefSeq Acc Id: XP_038954243   ⟸   XM_039098315
- UniProtKB: A0A8I6ABC4 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000093479   ⟸   ENSRNOT00000103491
Protein Domains
C2H2-type   KRAB

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-62515 BioCyc
Ensembl Genes ENSRNOG00000066299 UniProtKB/TrEMBL
  ENSRNOG00000070257 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000103491.1 UniProtKB/TrEMBL
  ENSRNOT00000117340.1 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.140 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro KRAB UniProtKB/TrEMBL
  KRAB_dom_sf UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene LOC102556157 ENTREZGENE
PANTHER NOVEL KRAB BOX AND ZINC FINGER, C2H2 TYPE DOMAIN CONTAINING PROTEIN-RELATED UniProtKB/TrEMBL
  RIKEN CDNA 6720489N17 GENE-RELATED UniProtKB/TrEMBL
  ZINC FINGER PROTEIN UniProtKB/TrEMBL
  ZNF44 PROTEIN UniProtKB/TrEMBL
Pfam KRAB UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
PhenoGen Zfp950l8 PhenoGen
PROSITE KRAB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000070257 RatGTEx
SMART KRAB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF109640 UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A0A8I6ABC4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AKH0_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Zfp950l8  zinc finger protein 950 like 8  LOC102556157  zinc finger protein 91-like  Symbol and Name Changed 1299863 APPROVED
2013-12-18 LOC102556157  zinc finger protein 91-like      Symbol and Name status set to provisional 70820 PROVISIONAL