LOC102549408 (uncharacterized LOC102549408) - Rat Genome Database

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Gene: LOC102549408 (uncharacterized LOC102549408) Rattus norvegicus
Analyze
Symbol: LOC102549408
Name: uncharacterized LOC102549408
RGD ID: 7563702
Description:
Type: ncrna (Ensembl: lincRNA)
RefSeq Status: MODEL
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8820,007,448 - 20,015,089 (+)NCBIGRCr8
mRatBN7.2811,726,525 - 11,733,801 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.0813,398,296 - 13,405,677 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl813,398,341 - 13,405,773 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0813,339,504 - 13,346,896 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera813,195,857 - 13,203,237 (+)NCBICelera
Cytogenetic Map8q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in LOC102549408
17 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
9590084Insglur5Insulin/glucose ratio QTL 518.540.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)8124597739Rat
2317882Alcrsp24Alcohol response QTL 243.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)8125902202Rat
12880023Bw184Body weight QTL 1840.001body mass (VT:0001259)body weight (CMO:0000012)8209764047097640Rat
12880025Cm102Cardiac mass QTL 1020.044heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)8209764047097640Rat
12880028Cm103Cardiac mass QTL 1030.02heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)8209764047097640Rat
12880044Am9Aortic mass QTL 90.007aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)8209764047097640Rat
2317032Ginf2Gastrointestinal inflammation QTL 23.210.005liver integrity trait (VT:0010547)liver granuloma severity score (CMO:0002157)8470581049705810Rat
2317036Livw3Liver weight QTL 32.430.01liver mass (VT:0003402)liver weight to body weight ratio (CMO:0000633)8470581049705810Rat
2317048Ginf1Gastrointestinal inflammation QTL 13.520.005cecum mucosa thickness (VT:0010234)enterocolitis severity score (CMO:0002138)8470581049705810Rat
2301416Bp315Blood pressure QTL 3150.008arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)8767057852670578Rat
1354595Despr4Despair related QTL 42.160.0036locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)8768895552688955Rat
1354627Despr14Despair related QTL 140.0056locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)8768895552688955Rat
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)88462195110921472Rat
2317030Wbc5White blood cell count QTL 53.210.005leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)8873663553736635Rat
2317051Aia18Adjuvant induced arthritis QTL 182.42joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)8873663553736635Rat
1598824Memor4Memory QTL 42.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)8971222053356647Rat
1357398Slep3Serum leptin concentration QTL 33.43blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)8971246341866876Rat
2302367Slep5Serum leptin concentration QTL 53.43blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)8971246341866876Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)810378157112202585Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 8
Low 1 1 13 11
Below cutoff 2 2 7 12 2 2 14 3 18 4 2

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000090397
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl813,398,341 - 13,405,773 (+)Ensembl
RefSeq Acc Id: XR_005487969
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8820,007,643 - 20,015,089 (+)NCBI
mRatBN7.2811,726,525 - 11,733,801 (+)NCBI
RefSeq Acc Id: XR_010054078
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8820,007,448 - 20,015,089 (+)NCBI
RefSeq Acc Id: XR_010054079
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8820,008,322 - 20,015,089 (+)NCBI
RefSeq Acc Id: XR_010054080
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8820,008,160 - 20,015,089 (+)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-31679 BioCyc
Ensembl Genes ENSRNOG00000056945 Ensembl
NCBI Gene LOC102549408 ENTREZGENE
PhenoGen LOC102549408 PhenoGen
RatGTEx ENSRNOG00000056945 RatGTEx
RNAcentral URS0000CCE7B7 RNACentral
  URS0000CCF06A RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-12-17 LOC102549408  uncharacterized LOC102549408      Symbol and Name status set to provisional 70820 PROVISIONAL