LOC102548079 (uncharacterized LOC102548079) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: LOC102548079 (uncharacterized LOC102548079) Rattus norvegicus
Analyze
Symbol: LOC102548079
Name: uncharacterized LOC102548079
RGD ID: 7555402
Description:
Type: ncrna
RefSeq Status: MODEL
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81144,942,117 - 44,982,454 (-)NCBIGRCr8
mRatBN7.21131,456,187 - 31,464,103 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.01132,373,687 - 32,379,615 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01135,976,322 - 35,981,335 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1131,111,234 - 31,118,523 (-)NCBICelera
Cytogenetic Map11q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in LOC102548079
59 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1598842Glom10Glomerulus QTL 103.4kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)11135331169Rat
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)11169446234Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)11104193166113562Rat
1641927Alcrsp10Alcohol response QTL 10alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)11843667453436674Rat
724517Uae18Urinary albumin excretion QTL 183.7urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)111647204744285911Rat
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)111897620886241447Rat
10058952Gmadr6Adrenal mass QTL 62.290.0072adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)112295940367959403Rat
8694376Bw156Body weight QTL 1562.250.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
9590313Scort20Serum corticosterone level QTL 206.510.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)112328045668280456Rat
9589032Epfw10Epididymal fat weight QTL 109.290.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)112328045668280456Rat
8694424Bw162Body weight QTL 1623.80.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112767241082846715Rat
1300130Rf20Renal function QTL 204.44kidney glomerulus integrity trait (VT:0010546)kidney glomerulus diameter (CMO:0001166)112952841860324829Rat
1300110Stl7Serum triglyceride level QTL 74.64blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)112952841882566702Rat
2298551Neuinf10Neuroinflammation QTL 103.7nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)113123913478851519Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_001840461 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001840462 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001845491 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001845492 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005491235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005491240 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010056063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010056064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010056065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010056066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010056067 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_595007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_595008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_601308 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_601316 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XR_005491235
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81144,942,117 - 44,982,445 (-)NCBI
mRatBN7.21131,456,187 - 31,464,103 (-)NCBI
RefSeq Acc Id: XR_005491240
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81144,942,117 - 44,982,454 (-)NCBI
mRatBN7.21131,456,187 - 31,464,101 (-)NCBI
RefSeq Acc Id: XR_010056063
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81144,942,117 - 44,982,454 (-)NCBI
RefSeq Acc Id: XR_010056064
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81144,942,117 - 44,982,454 (-)NCBI
RefSeq Acc Id: XR_010056065
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81144,942,117 - 44,982,454 (-)NCBI
RefSeq Acc Id: XR_010056066
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81144,942,117 - 44,982,454 (-)NCBI
RefSeq Acc Id: XR_010056067
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81144,942,117 - 44,982,454 (-)NCBI

Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-21848 BioCyc
NCBI Gene LOC102548079 ENTREZGENE
PhenoGen LOC102548079 PhenoGen
RNAcentral URS0000CCE341 RNACentral
  URS0000CCE80C RNACentral
  URS0000CCEAA8 RNACentral
  URS0000CCEB99 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-12-17 LOC102548079  uncharacterized LOC102548079      Symbol and Name status set to provisional 70820 PROVISIONAL