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Gene: Samd1 (sterile alpha motif domain containing 1) Rattus norvegicus
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Symbol: Samd1
Name: sterile alpha motif domain containing 1
Description: Orthologous to human SAMD1 (sterile alpha motif domain containing 1); INTERACTS WITH (-)-demecolcine (ortholog); ampicillin (ortholog); antirheumatic drug (ortholog).
Type: protein-coding
RefSeq Status: MODEL
Also known as: atherin; atherin-like; LOC102550189; LOC304649; RGD1305094; similar to CG2662-PA
Orthologs:
Homo sapiens (human) : SAMD1 (sterile alpha motif domain containing 1)  HGNC  Alliance
Mus musculus (house mouse) : Samd1 (sterile alpha motif domain containing 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Samd1 (sterile alpha motif domain containing 1)
Pan paniscus (bonobo/pygmy chimpanzee) : SAMD1 (sterile alpha motif domain containing 1)
Canis lupus familiaris (dog) : SAMD1 (sterile alpha motif domain containing 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Samd1 (sterile alpha motif domain containing 1)
Sus scrofa (pig) : SAMD1 (sterile alpha motif domain containing 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01925,119,560 - 25,122,781 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1925,120,128 - 25,122,233 (+)Ensembl
Rnor_5.01936,096,683 - 36,099,659 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41925,837,118 - 25,839,193 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11925,841,978 - 25,843,961 (-)NCBI
Celera1923,699,355 - 23,701,352 (-)NCBICelera
Cytogenetic Map19q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
References - curated

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Samd1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 7529921
Created: 2013-12-17
Species: Rattus norvegicus
Last Modified: 2019-11-27
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.