Gene: LOC102550021 (uncharacterized LOC102550021) Rattus norvegicus |
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Analyze |
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Symbol: |
LOC102550021 |
Name: |
uncharacterized LOC102550021 |
RGD ID: |
7527339 |
Description: |
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Type: |
ncrna
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RefSeq Status: |
MODEL |
Latest Assembly: |
mRatBN7.2 - mRatBN7.2 Assembly |
Position: |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 11 | 22,536,150 - 22,676,268 (+) | NCBI | | GRCr8 | | | mRatBN7.2 | 11 | 9,215,216 - 9,229,868 (+) | NCBI | mRatBN7.2 | mRatBN7.2 | | | Rnor_6.0 | 11 | 7,696,648 - 7,711,333 (+) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_5.0 | 11 | 11,387,557 - 11,402,140 (+) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | Celera | 11 | 9,131,948 - 9,146,620 (+) | NCBI | | Celera | | | Cytogenetic Map | 11 | p11 | NCBI | | | | |
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JBrowse: |
View Region in Genome Browser (JBrowse)
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Model |
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References
Genomics
QTLs in Region (mRatBN7.2)
634341 | Bw121 | Body weight QTL 121 | 3.56 | | abdominal fat pad mass (VT:1000711) | abdominal fat pad weight (CMO:0000088) | 11 | 1 | 21836709 | Rat | 1598842 | Glom10 | Glomerulus QTL 10 | 3.4 | | kidney glomerulus morphology trait (VT:0005325) | index of glomerular damage (CMO:0001135) | 11 | 1 | 35331169 | Rat | 1300147 | Bp187 | Blood pressure QTL 187 | 3.67 | | arterial blood pressure trait (VT:2000000) | blood pressure time series experimental set point of the baroreceptor response (CMO:0002593) | 11 | 1 | 69446234 | Rat | 1558659 | Tescar1 | Testicular tumor resistance QTL 1 | 3.9 | | testis integrity trait (VT:0010572) | percentage of study population developing testis tumors during a period of time (CMO:0001261) | 11 | 1041931 | 66113562 | Rat | 1641927 | Alcrsp10 | Alcohol response QTL 10 | | | alcohol metabolism trait (VT:0015089) | blood ethanol level (CMO:0000535) | 11 | 8436674 | 53436674 | Rat | |
Expression
Sequence
RefSeq Acc Id: |
XR_001840425 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
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GRCr8 | 11 | 22,661,576 - 22,676,268 (+) | NCBI | mRatBN7.2 | 11 | 9,215,216 - 9,229,868 (+) | NCBI | Rnor_6.0 | 11 | 7,696,648 - 7,711,333 (+) | NCBI |
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Sequence: |
CACCCCACAAGTACATACCTACTTATGGAAACACGCACGCACACATTCTCAGCATACACAGAGT CCAAAGACAGCAAAGGAAATACAGGGTTTTGATTTCATTTTGCAAGTAACATACTTATTTATCC ATCTGCACAAAAACGCTTTAGTCCCTCCGAAAAGCTCTGAAGTACAACTTGAAGCTTGTAGAGC CTTCAAGCAGCTCTTGAATTGTTCAGGATTGTTTCAGGTCCTGGAATGACCTATTTCTCCTACA TCTTCGAAGGCCTCGATTGTGATTCATCTCCCATCTCACAAACATTACCGGTCCGCTGAGAGAG AACTGACCATTCGCATTGTGTTTCTCATACAACATCATCTGGATTTCTGCAATCAACTTCCTGA TTTGTCTTCAGTGGCCCTGGAGAGATTCTGTCTAGGAAGATTATGCGTTTTTTCCCCCTTGCTT AAATTCTTAGAGTCCTCATCACATGCTAACTACAGAGCTTAAGAGTGGGATAGCATAGGGGAAA TGTGTACAAATCTTGCTTAGTAATTCCAATCTATGTGTCTTTTCCCAAACTAGAAATGACTAAT CTAAAAGATAACCACAGCTAACATTGAAAGCAGGCATATCTTAACAACTGAACACATATTTATC ATCCTGTTTTATAATACATATTTATAACAGTGTCTTATGGCACTATTTTATGTCCACACAAGAA AATGGAAGCTGAGAAAAGATAAATAACTTATATAGGATTACAATAAAACGCAATCCTAGCAGAA CAAGAAGCAAAATGGGTATCCTGTAGATCCCACATCTATACTCCTAAGCTTTGCATTTATTTAA CTCACAATACAGTGTTTATTTCA
hide sequence
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RefSeq Acc Id: |
XR_010055993 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
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GRCr8 | 11 | 22,569,675 - 22,676,268 (+) | NCBI |
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RefSeq Acc Id: |
XR_010055994 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
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GRCr8 | 11 | 22,569,666 - 22,676,268 (+) | NCBI |
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RefSeq Acc Id: |
XR_010055995 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
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GRCr8 | 11 | 22,536,150 - 22,676,268 (+) | NCBI |
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RefSeq Acc Id: |
XR_358080 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
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GRCr8 | 11 | 22,662,080 - 22,676,268 (+) | NCBI | mRatBN7.2 | 11 | 9,215,716 - 9,229,868 (+) | NCBI | Rnor_6.0 | 11 | 7,697,101 - 7,711,333 (+) | NCBI | Rnor_5.0 | 11 | 11,387,557 - 11,402,140 (+) | NCBI |
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Sequence: |
GCGTGTTAATTATAAGGATATTGGGTCAGAAGTAAAGGTGGGCAATGAATGGCTATGAATGCGT GAACGTAGCTTCCAAATAAATTACCGTTAGGCTCAAGCCTGCAATGCCCCAACTTCACCGTCGC TGGAACGTTTACCAGTTAATCGTTCTGACAGCTGGAAGGTCTCTGAAGTACAACTTGAAGCTTG TAGAGCCTTCAAGCAGCTCTTGAATTGTTCAGGATTGTTTCAGGTCCTGGAATGACCTATTTCT CCTACATCTTCGAAGGCCTCGATTGTGATTCATCTCCCATCTCACAAACATTACCGGTCCGCTG AGAGAGAACTGACCATTCGCATTGTGTTTCTCATACAACATCATCTGGATTTCTGCAATCAACT TCCTGATTTGTCTTCAGTGGCCCTGGAGAGATTCTGTCTAGGAAGATTATGCGTTTTTTCCCCC TTGCTTAAATTCTTAGAGTCCTCATCACATGCTAACTACAGAGCTTAAGAGTGGGATAGCATAG GGGAAATGTGTACAAATCTTGCTTAGTAATTCCAATCTATGTGTCTTTTCCCAAACTAGAAATG ACTAATCTAAAAGATAACCACAGCTAACATTGAAAGCAGGCATATCTTAACAACTGAACACATA TTTATCATCCTGTTTTATAATACATATTTATAACAGTGTCTTATGGCACTATTTTATGTCCACA CAAGAAAATGGAAGCTGAGAAAAGATAAATAACTTATATAGGATTACAATAAAACGCAATCCTA GCAGAACAAGAAGCAAAATGGGTATCCTGTAGATCCCACATCTATACTCCTAAGCTTTGCATTT ATTTAACTCACAATACAGTGTTTATTTCA
hide sequence
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RefSeq Acc Id: |
XR_358082 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
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GRCr8 | 11 | 22,669,051 - 22,676,268 (+) | NCBI | mRatBN7.2 | 11 | 9,223,210 - 9,229,868 (+) | NCBI | Rnor_6.0 | 11 | 7,705,461 - 7,711,333 (+) | NCBI | Rnor_5.0 | 11 | 11,387,557 - 11,402,140 (+) | NCBI |
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Sequence: |
GAAGATGTTATCCTGTTTCTCTCTGAAGTACAACTTGAAGCTTGTAGAGCCTTCAAGCAGCTCT TGAATTGTTCAGGATTGTTTCAGGTCCTGGAATGACCTATTTCTCCTACATCTTCGAAGGCCTC GATTGTGATTCATCTCCCATCTCACAAACATTACCGGTCCGCTGAGAGAGAACTGACCATTCGC ATTGTGTTTCTCATACAACATCATCTGGATTTCTGCAATCAACTTCCTGATTTGTCTTCAGTGG CCCTGGAGAGATTCTGTCTAGGAAGATTATGCGTTTTTTCCCCCTTGCTTAAATTCTTAGAGTC CTCATCACATGCTAACTACAGAGCTTAAGAGTGGGATAGCATAGGGGAAATGTGTACAAATCTT GCTTAGTAATTCCAATCTATGTGTCTTTTCCCAAACTAGAAATGACTAATCTAAAAGATAACCA CAGCTAACATTGAAAGCAGGCATATCTTAACAACTGAACACATATTTATCATCCTGTTTTATAA TACATATTTATAACAGTGTCTTATGGCACTATTTTATGTCCACACAAGAAAATGGAAGCTGAGA AAAGATAAATAACTTATATAGGATTACAATAAAACGCAATCCTAGCAGAACAAGAAGCAAAATG GGTATCCTGTAGATCCCACATCTATACTCCTAAGCTTTGCATTTATTTAACTCACAATACAGTG TTTATTTCA
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Additional Information
Nomenclature History
Date |
Current Symbol |
Current Name |
Previous Symbol |
Previous Name |
Description |
Reference |
Status |
2013-12-17 |
LOC102550021 |
uncharacterized LOC102550021 |
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Symbol and Name status set to provisional |
70820 |
PROVISIONAL |
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