LOC102551819 (U3 small nucleolar RNA-associated protein 14 homolog B-like) - Rat Genome Database

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Gene: LOC102551819 (U3 small nucleolar RNA-associated protein 14 homolog B-like) Rattus norvegicus
Analyze
No known orthologs.
Symbol: LOC102551819
Name: U3 small nucleolar RNA-associated protein 14 homolog B-like
RGD ID: 7514331
Description: Predicted to be involved in rRNA processing. Predicted to be located in nucleolus. Predicted to be part of small-subunit processome.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: U3 small nucleolar RNA-associated protein 14 homolog B
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8987,569,060 - 87,577,603 (+)NCBIGRCr8
mRatBN7.2980,120,622 - 80,129,166 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl980,115,077 - 80,129,504 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0984,549,610 - 84,554,263 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl984,550,603 - 84,552,964 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0984,307,300 - 84,311,894 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera977,627,431 - 77,632,374 (+)NCBICelera
Cytogenetic Map9q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in LOC102551819
49 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:133
Count of miRNA genes:111
Interacting mature miRNAs:118
Transcripts:ENSRNOT00000006672
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724547Cm21Cardiac mass QTL 212.7heart mass (VT:0007028)calculated heart weight (CMO:0000073)979271511102910209Rat
11353957Bmd92Bone mineral density QTL 920.01tibia mineral mass (VT:1000283)volumetric bone mineral density (CMO:0001553)94611419991114199Rat
61385Edpm9Estrogen-dependent pituitary mass QTL 93.430.05pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)963869687108869687Rat
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)925268044114175309Rat
1578760Cm53Cardiac mass QTL 533.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)956771635101771635Rat
1581580Uae34Urinary albumin excretion QTL 34urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)96207227596470995Rat
1354626Bvd1Brain ventricular dilatation QTL 13.730.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)975712843111552878Rat
7794784Mcs31Mammary carcinoma susceptibility QTL 312.98mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)977813894111552878Rat
12879506Pur33Proteinuria QTL 33urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)94464992189649921Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)925661188100929786Rat
10058949Gmadr5Adrenal mass QTL 520.014adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)94279151387976209Rat
1578757Pur6Proteinuria QTL 63.30.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)96207227596470995Rat
631656Bp108Blood pressure QTL 1085.970.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94859825193598251Rat
724515Uae16Urinary albumin excretion QTL 168urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)958163035100929646Rat
731171Glom6Glomerulus QTL 62.80.0003kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)964573531109573531Rat
8662828Vetf6Vascular elastic tissue fragility QTL 63.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)93696235992058970Rat
2303178Bp334Blood pressure QTL 3343.70.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)97927151191616855Rat
70186Niddm26Non-insulin dependent diabetes mellitus QTL 263.87blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)92207116986369743Rat
7207814Bmd91Bone mineral density QTL 913.5femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)92375414483851531Rat
6903941Pur31Proteinuria QTL 310.036urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)94019418885194188Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)93696235995410867Rat
11353949Bp393Blood pressure QTL 393arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94019418885194188Rat
11353951Bp394Blood pressure QTL 394arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94464992189649921Rat
10054125Srcrt7Stress Responsive Cort QTL 73.330.0011blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)9187073594Rat
1300134Bp185Blood pressure QTL 1853.73arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)961381434104821652Rat
4889852Pur26Proteinuria QTL 26150.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)977813894101597663Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 10 49 113 91 90 59 25 59 6 217 96 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000006672
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl984,550,603 - 84,552,964 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000104667   ⟹   ENSRNOP00000084067
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl980,115,077 - 80,129,504 (+)Ensembl
RefSeq Acc Id: XM_039084660   ⟹   XP_038940588
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8987,569,060 - 87,577,603 (+)NCBI
mRatBN7.2980,120,622 - 80,129,166 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001420340 (Get FASTA)   NCBI Sequence Viewer  
  XP_038940588 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000084067.1
RefSeq Acc Id: XP_038940588   ⟸   XM_039084660
- UniProtKB: A0A8I6A0H2 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000084067   ⟸   ENSRNOT00000104667

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-27022 BioCyc
Ensembl Genes ENSRNOG00000025970 Ensembl
  ENSRNOG00000063437 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000104667.1 UniProtKB/TrEMBL
InterPro SSU_processome_Utp14 UniProtKB/TrEMBL
NCBI Gene LOC102551819 ENTREZGENE
PANTHER PTHR14150 UniProtKB/TrEMBL
  U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 14 HOMOLOG B UniProtKB/TrEMBL
Pfam Utp14 UniProtKB/TrEMBL
PhenoGen LOC102551819 PhenoGen
RatGTEx ENSRNOG00000025970 RatGTEx
  ENSRNOG00000063437 RatGTEx
UniProt A0A8I6A0H2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-12-17 LOC102551819  U3 small nucleolar RNA-associated protein 14 homolog B-like      Symbol and Name status set to provisional 70820 PROVISIONAL