Rcor1 (REST corepressor 1) - Rat Genome Database

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Gene: Rcor1 (REST corepressor 1) Rattus norvegicus
Analyze
Symbol: Rcor1
Name: REST corepressor 1
RGD ID: 7505493
Description: Predicted to enable chromatin binding activity; enzyme binding activity; and transcription corepressor activity. Predicted to be involved in several processes, including histone H4 deacetylation; positive regulation of megakaryocyte differentiation; and regulation of DNA-templated transcription. Predicted to act upstream of or within erythrocyte differentiation. Predicted to be located in nucleoplasm. Predicted to be part of DNA repair complex; histone deacetylase complex; and transcription repressor complex. Orthologous to human RCOR1 (REST corepressor 1); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC314458; Mtfp1-like proline rich protein; Mtfp1-like proline rich protein gene; REST corepressor 1-like; RGD1305743
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.26130,069,606 - 130,146,164 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6130,069,392 - 130,146,153 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6130,246,376 - 130,324,659 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.06130,542,367 - 130,620,651 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.06129,907,204 - 129,982,978 (+)NCBIRnor_WKY
Rnor_6.06135,475,470 - 135,552,155 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6135,513,650 - 135,548,201 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl6135,549,137 - 135,552,144 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06144,865,122 - 144,938,735 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46135,859,305 - 135,862,320 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera6127,637,603 - 127,713,328 (+)NCBICelera
Cytogenetic Map6q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10449787   PMID:10734093   PMID:12477932   PMID:15632090   PMID:15907476   PMID:17392792   PMID:17555596   PMID:17707228   PMID:24217620   PMID:24652990   PMID:24843136  


Genomics

Comparative Map Data
Rcor1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.26130,069,606 - 130,146,164 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6130,069,392 - 130,146,153 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx6130,246,376 - 130,324,659 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.06130,542,367 - 130,620,651 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.06129,907,204 - 129,982,978 (+)NCBIRnor_WKY
Rnor_6.06135,475,470 - 135,552,155 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6135,513,650 - 135,548,201 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl6135,549,137 - 135,552,144 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06144,865,122 - 144,938,735 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46135,859,305 - 135,862,320 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera6127,637,603 - 127,713,328 (+)NCBICelera
Cytogenetic Map6q32NCBI
RCOR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3814102,592,649 - 102,730,561 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl14102,592,649 - 102,730,561 (+)EnsemblGRCh38hg38GRCh38
GRCh3714103,058,986 - 103,196,898 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3614102,128,986 - 102,266,666 (+)NCBINCBI36Build 36hg18NCBI36
Build 3414102,128,985 - 102,262,596NCBI
Celera1483,113,452 - 83,251,043 (+)NCBICelera
Cytogenetic Map14q32.31-q32.32NCBI
HuRef1483,235,824 - 83,373,621 (+)NCBIHuRef
CHM1_114102,996,742 - 103,134,551 (+)NCBICHM1_1
T2T-CHM13v2.01496,828,874 - 96,966,907 (+)NCBIT2T-CHM13v2.0
Rcor1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912111,005,801 - 111,082,336 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12111,005,785 - 111,082,335 (+)EnsemblGRCm39 Ensembl
GRCm3812111,039,367 - 111,115,902 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12111,039,351 - 111,115,901 (+)EnsemblGRCm38mm10GRCm38
MGSCv3712112,278,009 - 112,351,600 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3612111,487,606 - 111,561,197 (+)NCBIMGSCv36mm8
Celera12112,235,091 - 112,307,888 (+)NCBICelera
Cytogenetic Map12F1NCBI
cM Map1260.93NCBI
Rcor1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555381,774,910 - 1,880,545 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555381,774,910 - 1,880,550 (+)NCBIChiLan1.0ChiLan1.0
RCOR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.114103,113,011 - 103,162,255 (+)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v01483,209,992 - 83,346,783 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
RCOR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1870,586,259 - 70,637,453 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl870,585,567 - 70,627,158 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha870,018,180 - 70,149,933 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0870,782,695 - 70,914,590 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl870,782,393 - 70,909,263 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1870,447,029 - 70,578,641 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0870,511,580 - 70,643,208 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0870,911,508 - 71,043,165 (+)NCBIUU_Cfam_GSD_1.0
Rcor1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244086403,396,311 - 3,448,182 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936835747,477 - 799,703 (+)EnsemblSpeTri2.0
SpeTri2.0NW_004936835747,758 - 798,505 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RCOR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa10.27129,064,892 - 129,203,723 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RCOR1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12480,537,618 - 80,668,909 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605367,729,436 - 67,862,816 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rcor1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247341,866,830 - 1,972,986 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247341,866,886 - 1,972,685 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rcor1
273 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:113
Count of miRNA genes:99
Interacting mature miRNAs:103
Transcripts:ENSRNOT00000010676, ENSRNOT00000073989
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
731173Uae22Urinary albumin excretion QTL 2210.1urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
2290393Uae37Urinary albumin excretion QTL 370.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
724536Uae7Urinary albumin excretion QTL 73.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)672202632130729475Rat
1331799Bp211Blood pressure QTL 2113.66407arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)672202632130919985Rat
1581550Pur8Proteinuria QTL 8urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)672227641130729205Rat
1581563Uae33Urinary albumin excretion QTL 33urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)672227641130729205Rat
10054138Gmadr3Adrenal mass QTL 33.680.00045adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)685140138130140138Rat
10054123Srcrt6Stress Responsive Cort QTL 62.50.0043blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)685140138130140138Rat
724513Uae14Urinary albumin excretion QTL 146.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)685311061133478515Rat
1300076Glom8Glomerulus QTL 870.000000009kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)686894788131894788Rat
2303624Vencon5Ventilatory control QTL 54.45respiration trait (VT:0001943)minute ventilation (CMO:0000132)688047916133047916Rat
61414Pia3Pristane induced arthritis QTL 34.5joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)694968928137848904Rat
12801411Schws8Schwannoma susceptibility QTL 8nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)694968928139968928Rat
8552796Vie3Viral induced encephalitis QTL 32.6brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)696833997140994061Rat
1358355Srcrt4Stress Responsive Cort QTL 46.39blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)6100364669140994061Rat
2313399Anxrr28Anxiety related response QTL 28aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)6100671796132340886Rat
71111Iddm8Insulin dependent diabetes mellitus QTL 81.90.002blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)6105156861140994061Rat
4145118Mcs26Mammary carcinoma susceptibility QTL 260.0001mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)6106752656132339866Rat
737976Pia24Pristane induced arthritis QTL 24joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)6112636280140994061Rat
1298087Iddm18Insulin dependent diabetes mellitus QTL 180.0001urine glucose amount (VT:0001758)percentage of study population developing diabetes mellitus during a period of time (CMO:0001114)6116506292130245370Rat
1641917Colcr5Colorectal carcinoma resistance QTL 53.180.0009intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)6122549046137801795Rat
2293085Iddm29Insulin dependent diabetes mellitus QTL 297.66blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)6122549046140286318Rat
61329Eae9Experimental allergic encephalomyelitis QTL 93.7body mass (VT:0001259)change in body weight (CMO:0002045)6122549046140994061Rat
2312560Pur20Proteinuria QTL 202.10.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)6125628133137801795Rat

Markers in Region
D12Wsu95e  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21364,320,168 - 64,320,408 (+)MAPPERmRatBN7.2
mRatBN7.26130,145,873 - 130,146,109 (+)MAPPERmRatBN7.2
Rnor_6.06135,551,865 - 135,552,100NCBIRnor6.0
Rnor_6.01369,597,490 - 69,597,729NCBIRnor6.0
Rnor_5.01374,569,684 - 74,569,923UniSTSRnor5.0
Rnor_5.06144,862,668 - 144,862,903UniSTSRnor5.0
RGSC_v3.46135,862,033 - 135,862,268UniSTSRGSC3.4
RGSC_v3.41367,116,893 - 67,117,132UniSTSRGSC3.4
Celera1364,236,436 - 64,236,675UniSTS
Celera6127,713,041 - 127,713,276UniSTS
Cytogenetic Map6q32UniSTS
UniSTS:532325  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26130,143,145 - 130,143,521 (+)MAPPERmRatBN7.2
Rnor_6.06135,549,137 - 135,549,512NCBIRnor6.0
Rnor_5.06144,865,256 - 144,865,631UniSTSRnor5.0
Celera6127,710,313 - 127,710,688UniSTS
Cytogenetic Map6q32UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 6 53 74 44 37 44 2 2 116 64 76 21 2
Low 29 35 35 35 12 16 15 2 4 12
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000010676   ⟹   ENSRNOP00000010676
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl6130,107,853 - 130,140,139 (+)Ensembl
Rnor_6.0 Ensembl6135,513,650 - 135,548,201 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000073989   ⟹   ENSRNOP00000063912
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl6130,069,392 - 130,146,153 (+)Ensembl
Rnor_6.0 Ensembl6135,549,137 - 135,552,144 (+)Ensembl
RefSeq Acc Id: NM_001305463   ⟹   NP_001292392
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.26130,070,196 - 130,146,161 (+)NCBI
Rnor_6.06135,475,539 - 135,552,152 (+)NCBI
Celera6127,637,603 - 127,713,328 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017593974   ⟹   XP_017449463
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.26130,069,606 - 130,146,164 (+)NCBI
Rnor_6.06135,475,470 - 135,552,155 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039111600   ⟹   XP_038967528
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.26130,069,606 - 130,143,655 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_001292392   ⟸   NM_001305463
- Sequence:
RefSeq Acc Id: XP_017449463   ⟸   XM_017593974
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSRNOP00000063912   ⟸   ENSRNOT00000073989
RefSeq Acc Id: ENSRNOP00000010676   ⟸   ENSRNOT00000010676
RefSeq Acc Id: XP_038967528   ⟸   XM_039111600
- Peptide Label: isoform X2
Protein Domains
ELM2   SANT

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LXS5-F1-model_v2 AlphaFold F1LXS5 1-366 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:7505493 AgrOrtholog
BioCyc Gene G2FUF-35856 BioCyc
Ensembl Genes ENSRNOG00000008067 Ensembl
  ENSRNOG00000049783 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000010676.6 UniProtKB/TrEMBL
  ENSRNOP00000063912 ENTREZGENE
  ENSRNOP00000063912.2 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000010676.7 UniProtKB/TrEMBL
  ENSRNOT00000073989 ENTREZGENE
  ENSRNOT00000073989.3 UniProtKB/TrEMBL
Gene3D-CATH 1.20.58.1880 UniProtKB/TrEMBL
  4.10.1240.50 UniProtKB/TrEMBL
  Homeodomain-like UniProtKB/TrEMBL
InterPro Antifreeze_1 UniProtKB/TrEMBL
  ELM2_dom UniProtKB/TrEMBL
  Homeodomain-like UniProtKB/TrEMBL
  SANT/Myb UniProtKB/TrEMBL
  SANT_dom UniProtKB/TrEMBL
KEGG Report rno:102554884 UniProtKB/TrEMBL
NCBI Gene LOC102554884 ENTREZGENE
PANTHER REST COREPRESSOR 1 UniProtKB/TrEMBL
  REST COREPRESSOR COREST PROTEIN-RELATED UniProtKB/TrEMBL
Pfam ELM2 UniProtKB/TrEMBL
  Myb_DNA-binding UniProtKB/TrEMBL
PhenoGen Rcor1 PhenoGen
PRINTS ANTIFREEZEI UniProtKB/TrEMBL
PROSITE ELM2 UniProtKB/TrEMBL
  SANT UniProtKB/TrEMBL
SMART ELM2 UniProtKB/TrEMBL
  SANT UniProtKB/TrEMBL
Superfamily-SCOP SSF46689 UniProtKB/TrEMBL
UniProt B5DEY2_RAT UniProtKB/TrEMBL
  F1LXS5_RAT UniProtKB/TrEMBL
  M0R3J8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-03-19 LOC102554884  REST corepressor 1-like  RGD1305743  Mtfp1-like proline rich protein gene  Data Merged 737654 APPROVED
2015-03-19 Rcor1  REST corepressor 1  LOC102554884  REST corepressor 1-like  Name and Symbol and Type changed (type changed from [null] to [protein-coding]) 629549 APPROVED
2013-12-17 LOC102554884  REST corepressor 1-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2013-09-16 RGD1305743  Mtfp1-like proline rich protein gene  Rcor1  REST corepressor 1  Name and Symbol changed 629549 APPROVED
2008-04-30 Rcor1  REST corepressor 1   Rcor1_predicted  REST corepressor 1 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Rcor1_predicted  REST corepressor 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED