Rcor1 (REST corepressor 1) - Rat Genome Database

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Gene: Rcor1 (REST corepressor 1) Rattus norvegicus
Analyze
Symbol: Rcor1
Name: REST corepressor 1
RGD ID: 7505493
Description: Predicted to enable chromatin binding activity; enzyme binding activity; and transcription corepressor activity. Predicted to be involved in positive regulation of megakaryocyte differentiation and regulation of gene expression. Predicted to act upstream of or within erythrocyte differentiation. Predicted to be located in nucleus. Predicted to be part of DNA repair complex; nucleoplasm; and transcription repressor complex. Orthologous to human RCOR1 (REST corepressor 1); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC314458; Mtfp1-like proline rich protein; Mtfp1-like proline rich protein gene; REST corepressor 1-like; RGD1305743
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86135,890,851 - 135,967,367 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl6135,890,851 - 135,967,367 (+)EnsemblGRCr8
mRatBN7.26130,069,606 - 130,146,164 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6130,069,392 - 130,146,153 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx6130,246,376 - 130,324,659 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06130,542,367 - 130,620,651 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06129,907,204 - 129,982,978 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.06135,475,470 - 135,552,155 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6135,513,650 - 135,548,201 (+)Ensemblrn6Rnor6.0
Rnor_6.0 Ensembl6135,549,137 - 135,552,144 (+)Ensemblrn6Rnor6.0
Rnor_5.06144,865,122 - 144,938,735 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.46135,859,305 - 135,862,320 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera6127,637,603 - 127,713,328 (+)NCBICelera
Cytogenetic Map6q32NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10449787   PMID:10734093   PMID:12477932   PMID:15632090   PMID:15907476   PMID:17392792   PMID:17555596   PMID:17707228   PMID:24217620   PMID:24652990   PMID:24843136   PMID:37978036  


Genomics

Comparative Map Data
Rcor1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86135,890,851 - 135,967,367 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl6135,890,851 - 135,967,367 (+)EnsemblGRCr8
mRatBN7.26130,069,606 - 130,146,164 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6130,069,392 - 130,146,153 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx6130,246,376 - 130,324,659 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.06130,542,367 - 130,620,651 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.06129,907,204 - 129,982,978 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.06135,475,470 - 135,552,155 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6135,513,650 - 135,548,201 (+)Ensemblrn6Rnor6.0
Rnor_6.0 Ensembl6135,549,137 - 135,552,144 (+)Ensemblrn6Rnor6.0
Rnor_5.06144,865,122 - 144,938,735 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.46135,859,305 - 135,862,320 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera6127,637,603 - 127,713,328 (+)NCBICelera
Cytogenetic Map6q32NCBI
RCOR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3814102,592,649 - 102,730,561 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl14102,592,649 - 102,730,576 (+)Ensemblhg38GRCh38
GRCh3714103,058,986 - 103,196,898 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3614102,128,986 - 102,266,666 (+)NCBIBuild 36Build 36hg18NCBI36
Build 3414102,128,985 - 102,262,596NCBI
Celera1483,113,452 - 83,251,043 (+)NCBICelera
Cytogenetic Map14q32.31-q32.32NCBI
HuRef1483,235,824 - 83,373,621 (+)NCBIHuRef
CHM1_114102,996,742 - 103,134,551 (+)NCBICHM1_1
T2T-CHM13v2.01496,828,874 - 96,966,907 (+)NCBIT2T-CHM13v2.0
Rcor1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3912111,005,801 - 111,082,336 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl12111,005,785 - 111,082,335 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm3812111,039,367 - 111,115,902 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl12111,039,351 - 111,115,901 (+)Ensemblmm10GRCm38
MGSCv3712112,278,009 - 112,351,600 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv3612111,487,606 - 111,561,197 (+)NCBIMGSCv36mm8
Celera12112,235,091 - 112,307,888 (+)NCBICelera
Cytogenetic Map12F1NCBI
cM Map1260.93NCBI
Rcor1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555381,774,910 - 1,880,545 (+)Ensembl
ChiLan1.0NW_0049555381,774,910 - 1,880,550 (+)NCBIChiLan1.0ChiLan1.0
RCOR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v215103,742,618 - 103,879,516 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan114102,959,127 - 103,095,999 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01483,209,992 - 83,346,783 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.114103,113,011 - 103,162,255 (+)NCBIPanPan1.1PanPan1.1panPan2
RCOR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1870,586,259 - 70,637,453 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl870,585,567 - 70,627,158 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha870,018,180 - 70,149,933 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0870,782,695 - 70,914,590 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl870,782,393 - 70,909,263 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1870,447,029 - 70,578,641 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0870,511,580 - 70,643,208 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0870,911,508 - 71,043,165 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Rcor1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244086403,396,311 - 3,448,182 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936835747,477 - 799,703 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936835747,758 - 798,505 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RCOR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa10.27129,064,892 - 129,203,723 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RCOR1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12480,537,618 - 80,668,909 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605367,729,436 - 67,862,816 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rcor1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247341,866,830 - 1,972,986 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247341,866,886 - 1,972,685 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Rcor1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v17128,612,549 - 128,687,760 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Rcor1
4761 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:113
Count of miRNA genes:99
Interacting mature miRNAs:103
Transcripts:ENSRNOT00000010676, ENSRNOT00000073989
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4145118Mcs26Mammary carcinoma susceptibility QTL 260.0001mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)6112483610147156653Rat
1331797Bp213Blood pressure QTL 2133.291arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)6114241077147156653Rat
1331799Bp211Blood pressure QTL 2113.66407arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)688019181136741135Rat
1581563Uae33Urinary albumin excretion QTL 33urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)693560258136550638Rat
1641917Colcr5Colorectal carcinoma resistance QTL 53.180.0009intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)698944780143944780Rat
61414Pia3Pristane induced arthritis QTL 34.5joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)6100704576136029228Rat
71111Iddm8Insulin dependent diabetes mellitus QTL 81.90.002blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)6110921244147156653Rat
724524Uae2Urinary albumin excretion QTL 22.70.0005urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)679198463144254945Rat
1358355Srcrt4Stress Responsive Cort QTL 46.39blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)6106095977147156653Rat
2303624Vencon5Ventilatory control QTL 54.45respiration trait (VT:0001943)minute ventilation (CMO:0000132)693778632138778632Rat
724536Uae7Urinary albumin excretion QTL 73.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)693560258136550638Rat
737976Pia24Pristane induced arthritis QTL 24joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)6118366855147156653Rat
2312560Pur20Proteinuria QTL 202.10.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)6131392689143944780Rat
2313399Anxrr28Anxiety related response QTL 28aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)6101593607138161926Rat
1298087Iddm18Insulin dependent diabetes mellitus QTL 180.0001urine glucose amount (VT:0001758)percentage of study population developing diabetes mellitus during a period of time (CMO:0001114)6122236101147156653Rat
1581550Pur8Proteinuria QTL 8urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)693560258136550638Rat
12801471Schws9Schwannoma susceptibility QTL 9nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)6101593607146593607Rat
2293085Iddm29Insulin dependent diabetes mellitus QTL 297.66blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)6121444670147156653Rat

Markers in Region
D12Wsu95e  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21364,320,168 - 64,320,408 (+)MAPPERmRatBN7.2
mRatBN7.26130,145,873 - 130,146,109 (+)MAPPERmRatBN7.2
Rnor_6.06135,551,865 - 135,552,100NCBIRnor6.0
Rnor_6.01369,597,490 - 69,597,729NCBIRnor6.0
Rnor_5.01374,569,684 - 74,569,923UniSTSRnor5.0
Rnor_5.06144,862,668 - 144,862,903UniSTSRnor5.0
RGSC_v3.46135,862,033 - 135,862,268UniSTSRGSC3.4
RGSC_v3.41367,116,893 - 67,117,132UniSTSRGSC3.4
Celera1364,236,436 - 64,236,675UniSTS
Celera6127,713,041 - 127,713,276UniSTS
Cytogenetic Map6q32UniSTS
UniSTS:532325  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26130,143,145 - 130,143,521 (+)MAPPERmRatBN7.2
Rnor_6.06135,549,137 - 135,549,512NCBIRnor6.0
Rnor_5.06144,865,256 - 144,865,631UniSTSRnor5.0
Celera6127,710,313 - 127,710,688UniSTS
Cytogenetic Map6q32UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
25 19 112 259 177 176 115 116 115 12 556 280 11 220 122 150 61 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000010676   ⟹   ENSRNOP00000010676
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl6135,929,477 - 135,961,342 (+)Ensembl
mRatBN7.2 Ensembl6130,107,853 - 130,140,139 (+)Ensembl
Rnor_6.0 Ensembl6135,513,650 - 135,548,201 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000073989   ⟹   ENSRNOP00000063912
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl6135,890,851 - 135,967,367 (+)Ensembl
mRatBN7.2 Ensembl6130,069,392 - 130,146,153 (+)Ensembl
Rnor_6.0 Ensembl6135,549,137 - 135,552,144 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000127216   ⟹   ENSRNOP00000111847
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl6135,890,851 - 135,967,367 (+)Ensembl
RefSeq Acc Id: NM_001415131   ⟹   NP_001402060
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86135,890,851 - 135,967,367 (+)NCBI
mRatBN7.26130,069,639 - 130,146,164 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001402060 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI68849 (Get FASTA)   NCBI Sequence Viewer  
  EDL97483 (Get FASTA)   NCBI Sequence Viewer  
  EDL97484 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000010676.6
  ENSRNOP00000063912
  ENSRNOP00000063912.2
  ENSRNOP00000111847.1
Ensembl Acc Id: ENSRNOP00000063912   ⟸   ENSRNOT00000073989
Ensembl Acc Id: ENSRNOP00000010676   ⟸   ENSRNOT00000010676
RefSeq Acc Id: NP_001402060   ⟸   NM_001415131
- UniProtKB: M0R3J8 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000111847   ⟸   ENSRNOT00000127216
Protein Domains
ELM2   SANT

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LXS5-F1-model_v2 AlphaFold F1LXS5 1-366 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:7505493 AgrOrtholog
BioCyc Gene G2FUF-35856 BioCyc
Ensembl Genes ENSRNOG00000008067 Ensembl
  ENSRNOG00000049783 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000010676.8 UniProtKB/TrEMBL
  ENSRNOT00000073989 ENTREZGENE
  ENSRNOT00000073989.4 UniProtKB/TrEMBL
  ENSRNOT00000127216.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.58.1880 UniProtKB/TrEMBL
  4.10.1240.50 UniProtKB/TrEMBL
  Homeodomain-like UniProtKB/TrEMBL
InterPro Antifreeze_1 UniProtKB/TrEMBL
  ELM2_dom UniProtKB/TrEMBL
  Homeodomain-like UniProtKB/TrEMBL
  REST_helical UniProtKB/TrEMBL
  SANT/Myb UniProtKB/TrEMBL
  SANT_dom UniProtKB/TrEMBL
  Trans_reg/Corepressor UniProtKB/TrEMBL
NCBI Gene LOC102554884 ENTREZGENE
PANTHER REST COREPRESSOR 1 UniProtKB/TrEMBL
  REST COREPRESSOR COREST PROTEIN-RELATED UniProtKB/TrEMBL
Pfam ELM2 UniProtKB/TrEMBL
  Myb_DNA-binding UniProtKB/TrEMBL
  REST_helical UniProtKB/TrEMBL
PhenoGen Rcor1 PhenoGen
PRINTS ANTIFREEZEI UniProtKB/TrEMBL
PROSITE ELM2 UniProtKB/TrEMBL
  SANT UniProtKB/TrEMBL
RatGTEx ENSRNOG00000008067 RatGTEx
  ENSRNOG00000049783 RatGTEx
SMART ELM2 UniProtKB/TrEMBL
  SANT UniProtKB/TrEMBL
Superfamily-SCOP SSF46689 UniProtKB/TrEMBL
UniProt A0ABK0LLL8_RAT UniProtKB/TrEMBL
  B5DEY2_RAT UniProtKB/TrEMBL
  F1LXS5_RAT UniProtKB/TrEMBL
  M0R3J8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-03-19 LOC102554884  REST corepressor 1-like  RGD1305743  Mtfp1-like proline rich protein gene  Data merged from RGD:1305743 737654 APPROVED
2015-03-19 Rcor1  REST corepressor 1  LOC102554884  REST corepressor 1-like  Name and Symbol and Type changed (type changed from [null] to [protein-coding]) 629549 APPROVED
2013-12-17 LOC102554884  REST corepressor 1-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2013-09-16 RGD1305743  Mtfp1-like proline rich protein gene  Rcor1  REST corepressor 1  Name and Symbol changed 629549 APPROVED
2008-04-30 Rcor1  REST corepressor 1   Rcor1_predicted  REST corepressor 1 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Rcor1_predicted  REST corepressor 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED