n-TAtgc4 (nuclear encoded tRNA alanine 4 (anticodon TGC))

Gene: n-TAtgc4 (nuclear encoded tRNA alanine 4 (anticodon TGC)) Mus musculus

Analyze

Symbol:

n-TAtgc4

Name:

nuclear encoded tRNA alanine 4 (anticodon TGC)

RGD ID:

7488614

MGI Page

MGI

Description:

Type:

trna

RefSeq Status:

MODEL

Previously known as:

n-Ta33; nuclear encoded tRNA alanine 33 (anticodon TGC)

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	135,331,114 - 135,331,185 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm38	X	136,430,365 - 136,430,436 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
MGSCv37	MT	136,430,365 - 136,430,436 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
Cytogenetic Map	X	F1	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

Cellular Component

cellular_component (ND)

Molecular Function

molecular_function (ND)

References

Additional References at PubMed

PMID:18984615

Genomics

Variants

Variants in n-TAtgc4
5 total Variants

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1357433	Dbts2_m	diabetes 2 (mouse)			Not determined		X	7226295	150107038	Mouse
13824980	Ferq1_m	genetic fertility QTL 1 (mouse)					X	54045360	148782996	Mouse
4141665	Mhysq2_m	male hybrid sterility QTL 2 (mouse)			Not determined			71453852	139203212	Mouse
13208552	Wght12_m	weight 12 (mouse)					X	94043606	149782996	Mouse
13208556	Lgth14_m	body length 14 (mouse)					X	94043606	149782996	Mouse
1357823	Spha3_m	sperm head anomaly 3 (mouse)			Not determined		X	102055848	162758941	Mouse
1301209	Cia19_m	collagen induced arthritis 19 (mouse)			Not determined		X	120993165	160213038	Mouse
25314309	Syncl5_m	synaptonemal complex length 5 (mouse)					X	121909697	152582996	Mouse
10412164	Cmv2_m	cytomegalovirus resistance 2 (mouse)			Not determined		X	125685149	159685269	Mouse
13824981	Svwq2_m	seminal vesicle weight QTL 2 (mouse)					X	128900749	153782996	Mouse
1558900	Bw3_m	body weight QTL 3 (mouse)			Not determined		X	133540040	165298595	Mouse

Expression

Sequence

Nucleotide Sequences


GenBank Nucleotide	AL672068	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Additional Information

External Database Links

Database	Acc Id	Source(s)
MGD	MGI:4413706	ENTREZGENE
NCBI Gene	n-Ta33	ENTREZGENE
PhenoGen	n-TAtgc4	PhenoGen

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-03-21	n-TAtgc4	nuclear encoded tRNA alanine 4 (anticodon TGC)	n-Ta33	nuclear encoded tRNA alanine 33 (anticodon TGC)	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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