ADAMTS7P3 (ADAMTS7 pseudogene 3) - Rat Genome Database

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Gene: ADAMTS7P3 (ADAMTS7 pseudogene 3) Homo sapiens
Analyze
Symbol: ADAMTS7P3
Name: ADAMTS7 pseudogene 3
RGD ID: 7402203
HGNC Page HGNC:49409
Description:
Type: pseudo (Ensembl: transcribed_unprocessed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: ADAMTS7  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381577,976,009 - 77,993,241 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1577,976,042 - 77,993,057 (+)EnsemblGRCh38hg38GRCh38
GRCh371578,268,351 - 78,285,583 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361576,054,673 - 76,073,622 (+)NCBINCBI36Build 36hg18NCBI36
Celera1555,203,287 - 55,221,424 (+)NCBICelera
Cytogenetic Map15q24.3NCBI
HuRef1555,024,858 - 55,042,972 (+)NCBIHuRef
CHM1_11578,386,025 - 78,403,339 (+)NCBICHM1_1
T2T-CHM13v2.01575,838,245 - 75,855,784 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:23354978  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:704
Count of miRNA genes:500
Interacting mature miRNAs:559
Transcripts:ENST00000566116, ENST00000568041
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 1 1 1 7 480
Low 731 726 109 91 49 12 1004 639 246 20 509 230 80 125 724 2
Below cutoff 1548 2089 1407 362 1225 281 3184 1407 2967 223 778 755 86 1078 1956 2

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000566116
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1577,976,042 - 77,993,057 (+)Ensembl
RefSeq Acc Id: ENST00000568041
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1577,987,992 - 77,988,590 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC ADAMTS7P3 COSMIC
Ensembl Genes ENSG00000261143 Ensembl, ENTREZGENE
GTEx ENSG00000261143 GTEx
HGNC ID HGNC:49409 ENTREZGENE
Human Proteome Map ADAMTS7P3 Human Proteome Map
NCBI Gene ADAMTS7P3 ENTREZGENE